WormBase Tree Display for Gene: WBGene00017510
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| WBGene00017510 | SMap | S_parent | Sequence | F16B4 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | nhr-178 | Person_evidence | WBPerson600 | |||||
| Sequence_name | F16B4.9 | ||||||||
| Molecular_name | F16B4.9 | ||||||||
| F16B4.9.1 | |||||||||
| CE17680 | |||||||||
| Other_name | F16B4.c | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_F16B4.9 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | nhr-178 | ||||||||
| DB_info | Database | AceView | gene | 5C82 | |||||
| WormQTL | gene | WBGene00017510 | |||||||
| WormFlux | gene | WBGene00017510 | |||||||
| NDB | locus_tag | CELE_F16B4.9 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00017510|UniProtKB=O44635 | |||||||
| family | PTHR45680 | ||||||||
| NCBI | gene | 184560 | |||||||
| RefSeq | protein | NM_071053.4 | |||||||
| TrEMBL | UniProtAcc | O44635 | |||||||
| UniProt_GCRP | UniProtAcc | O44635 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:58 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 22 Jul 2005 10:29:12 | WBPerson2970 | Name_change | CGC_name | nhr-178 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nhr | ||||||||
| Allele (74) | |||||||||
| Strain | WBStrain00037173 | ||||||||
| WBStrain00037350 | |||||||||
| WBStrain00030238 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00033000 | ||||||||
| 00033001 | |||||||||
| 00033002 | |||||||||
| 00122863 | |||||||||
| 00122864 | |||||||||
| 00122865 | |||||||||
| 00122866 | |||||||||
| Ortholog (23) | |||||||||
| Paralog (217) | |||||||||
| Structured_description | Automated_description | Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. Expressed in several structures, including ciliated neurons; coelomocyte; intestine; pharynx; and spermatheca. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F16B4.9 | |||||||
| Corresponding_CDS_history | F16B4.9:wp106 | ||||||||
| Corresponding_transcript | F16B4.9.1 | ||||||||
| Other_sequence | FD515604.1 | ||||||||
| CSC01031_1 | |||||||||
| DW718468.1 | |||||||||
| CR03068 | |||||||||
| CRC09272_1 | |||||||||
| Associated_feature | WBsf978327 | ||||||||
| WBsf999367 | |||||||||
| WBsf999368 | |||||||||
| WBsf999369 | |||||||||
| WBsf1019202 | |||||||||
| WBsf1019203 | |||||||||
| WBsf233339 | |||||||||
| WBsf233340 | |||||||||
| Transcription_factor | WBTranscriptionFactor000989 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00031034 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00044797 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00093018 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00023426 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00013410 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00107344 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00084683 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr7507 | ||||||||
| Expr9110 | |||||||||
| Expr15770 | |||||||||
| Expr1010571 | |||||||||
| Expr1148760 | |||||||||
| Expr2014079 | |||||||||
| Expr2032319 | |||||||||
| Drives_construct | WBCnstr00006153 | ||||||||
| WBCnstr00012652 | |||||||||
| WBCnstr00013728 | |||||||||
| WBCnstr00027245 | |||||||||
| Construct_product | WBCnstr00016835 | ||||||||
| WBCnstr00027245 | |||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (147) | |||||||||
| Interaction (31) | |||||||||
| Map_info | Map | V | Position | -18.3576 | Error | 0.071061 | |||
| Positive | Positive_clone | F16B4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5362 | |||||||
| 5390 | |||||||||
| 4186 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027288 | ||||||||
| WBPaper00062515 | |||||||||
| WBPaper00064291 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
