WormBase Tree Display for Gene: WBGene00017733
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| WBGene00017733 | SMap | S_parent | Sequence | F23C8 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | ubxn-1 | Person_evidence | WBPerson2838 | |||||
| WBPerson4369 | |||||||||
| Sequence_name | F23C8.4 | ||||||||
| Molecular_name | F23C8.4 | ||||||||
| F23C8.4.1 | |||||||||
| CE20713 | |||||||||
| Other_name | CELE_F23C8.4 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | ubxn-1 | ||||||||
| DB_info | Database | AceView | gene | 1D3 | |||||
| WormQTL | gene | WBGene00017733 | |||||||
| WormFlux | gene | WBGene00017733 | |||||||
| NDB | locus_tag | CELE_F23C8.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00017733|UniProtKB=Q9TXH9 | |||||||
| family | PTHR46340 | ||||||||
| NCBI | gene | 171804 | |||||||
| RefSeq | protein | NM_058577.8 | |||||||
| SwissProt | UniProtAcc | Q9TXH9 | |||||||
| TREEFAM | TREEFAM_ID | TF313944 | |||||||
| UniProt_GCRP | UniProtAcc | Q9TXH9 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:59 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 05 Jan 2006 11:22:20 | WBPerson2970 | Name_change | CGC_name | ubxn-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ubxn | ||||||||
| Allele (50) | |||||||||
| Strain | WBStrain00034995 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (20) | |||||||||
| Ortholog (38) | |||||||||
| Paralog | WBGene00022703 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| Structured_description | Concise_description | ubxn-1 encodes one of six C. elegans UBX (ubiquitin regulatory X) domain-containing proteins. | Paper_evidence | WBPaper00029386 | |||||
| WBPaper00037734 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 05 Apr 2011 00:00:00 | ||||||||
| Automated_description | Enables K48-linked polyubiquitin modification-dependent protein binding activity. Involved in masculinization of hermaphroditic germ-line; positive regulation of protein catabolic process; and spermatogenesis. Acts upstream of or within IRE1-mediated unfolded protein response. Located in perinuclear region of cytoplasm. Expressed in several structures, including gonad and spermatocyte. Is an ortholog of human UBXN1 (UBX domain protein 1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F23C8.4 | |||||||
| Corresponding_transcript | F23C8.4.1 | ||||||||
| Other_sequence | Tcol_isotig02697 | ||||||||
| Tcir_isotig07188 | |||||||||
| Oden_isotig20314 | |||||||||
| HC00184 | |||||||||
| PPC14046_1 | |||||||||
| CJC02139_1 | |||||||||
| CRC06799_1 | |||||||||
| OOC03923_1 | |||||||||
| PPC06087_1 | |||||||||
| Associated_feature | WBsf643094 | ||||||||
| WBsf978673 | |||||||||
| WBsf217302 | |||||||||
| WBsf217303 | |||||||||
| Transcription_factor | WBTranscriptionFactor000993 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00078145 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00061791 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00117067 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00031317 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00045402 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00003439 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr4667 | ||||||||
| Expr4673 | |||||||||
| Expr11592 | |||||||||
| Expr1022886 | |||||||||
| Expr1037611 | |||||||||
| Expr1149324 | |||||||||
| Expr1200280 | |||||||||
| Expr2017730 | |||||||||
| Expr2035868 | |||||||||
| Drives_construct | WBCnstr00012161 | ||||||||
| WBCnstr00027066 | |||||||||
| Construct_product | WBCnstr00012161 | ||||||||
| WBCnstr00021777 | |||||||||
| WBCnstr00027066 | |||||||||
| Antibody | WBAntibody00002586 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (119) | |||||||||
| Interaction (85) | |||||||||
| Map_info | Map | I | Position | -8.68903 | Error | 0.036496 | |||
| Positive | Positive_clone | F23C8 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027357 | ||||||||
| WBPaper00029386 | |||||||||
| WBPaper00032135 | |||||||||
| WBPaper00037734 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064339 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
