WormBase Tree Display for Gene: WBGene00017768
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| WBGene00017768 | SMap | S_parent | Sequence | F25B4 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | prp-39 | |||||||
| Sequence_name | F25B4.5 | ||||||||
| Molecular_name | F25B4.5 | ||||||||
| F25B4.5.1 | |||||||||
| CE28000 | |||||||||
| Other_name | CELE_F25B4.5 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | prp-39 | ||||||||
| DB_info | Database | AceView | gene | 5G160 | |||||
| WormQTL | gene | WBGene00017768 | |||||||
| WormFlux | gene | WBGene00017768 | |||||||
| NDB | locus_tag | CELE_F25B4.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00017768|UniProtKB=Q22961 | |||||||
| family | PTHR17204 | ||||||||
| NCBI | gene | 178955 | |||||||
| RefSeq | protein | NM_072094.6 | |||||||
| TREEFAM | TREEFAM_ID | TF314746 | |||||||
| TrEMBL | UniProtAcc | Q22961 | |||||||
| UniProt_GCRP | UniProtAcc | Q22961 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:59 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 11 Mar 2021 09:37:10 | WBPerson1983 | Name_change | CGC_name | prp-39 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | prp | ||||||||
| Allele (56) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00076849 | ||||||||
| 00076850 | |||||||||
| 00076851 | |||||||||
| 00076852 | |||||||||
| 00076853 | |||||||||
| 00123083 | |||||||||
| Contained_in_operon | CEOP5080 | ||||||||
| Ortholog (38) | |||||||||
| Structured_description | Automated_description | Predicted to contribute to pre-mRNA 5'-splice site binding activity. Predicted to be involved in mRNA 5'-splice site recognition. Predicted to be part of U1 snRNP; U2-type prespliceosome; and commitment complex. Is an ortholog of human PRPF39 (pre-mRNA processing factor 39). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F25B4.5 | |||||||
| Corresponding_transcript | F25B4.5.1 | ||||||||
| Other_sequence (15) | |||||||||
| Associated_feature | WBsf668963 | ||||||||
| WBsf668964 | |||||||||
| WBsf668965 | |||||||||
| WBsf1000062 | |||||||||
| WBsf1000063 | |||||||||
| WBsf1000064 | |||||||||
| WBsf1000065 | |||||||||
| WBsf1019671 | |||||||||
| WBsf233713 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00083631 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00045468 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00083733 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00013848 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00083856 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1024177 | ||||||||
| Expr1037632 | |||||||||
| Expr1149387 | |||||||||
| Expr2002944 | |||||||||
| Expr2021160 | |||||||||
| Drives_construct | WBCnstr00027035 | ||||||||
| Construct_product | WBCnstr00027035 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (100) | |||||||||
| Interaction (115) | |||||||||
| Map_info | Positive | Positive_clone | F25B4 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | V | -1.24875 | |||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| Method | Gene |
