WormBase Tree Display for Gene: WBGene00018166
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WBGene00018166 | SMap | S_parent | Sequence | F38A5 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | nspb-5 | Person_evidence | WBPerson655 | |||||
Sequence_name | F38A5.9 | ||||||||
Molecular_name | F38A5.9 | ||||||||
F38A5.9.1 | |||||||||
CE10042 | |||||||||
Other_name | CELE_F38A5.9 | Accession_evidence | NDB | BX284604 | |||||
Public_name | nspb-5 | ||||||||
DB_info | Database | AceView | gene | 4H363 | |||||
WormQTL | gene | WBGene00018166 | |||||||
WormFlux | gene | WBGene00018166 | |||||||
NDB | locus_tag | CELE_F38A5.9 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00018166|UniProtKB=Q94209 | |||||||
family | PTHR31887 | ||||||||
NCBI | gene | 185445 | |||||||
RefSeq | protein | NM_068612.3 | |||||||
TREEFAM | TREEFAM_ID | TF319426 | |||||||
TrEMBL | UniProtAcc | Q94209 | |||||||
UniProt_GCRP | UniProtAcc | Q94209 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:30:59 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 06 May 2005 10:44:15 | WBPerson2970 | Name_change | CGC_name | nspb-5 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | nspb | ||||||||
Allele (14) | |||||||||
RNASeq_FPKM (74) | |||||||||
Ortholog (13) | |||||||||
Paralog | WBGene00018162 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
Inparanoid_8 | |||||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00018169 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Inparanoid_8 | |||||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00019152 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Inparanoid_8 | |||||||||
Panther | |||||||||
WBGene00018170 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Inparanoid_8 | |||||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00018167 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Inparanoid_8 | |||||||||
Panther | |||||||||
Structured_description | Automated_description | Enriched in pharyngeal muscle cell and rectal gland cell based on single-cell RNA-seq studies. Is affected by several genes including daf-2; eat-2; and sir-2.1 based on quantitative PCR; microarray; and RNA-seq studies. Is affected by Doxycycline and Colistin based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: Protein of unknown function (DUF1459) and Protein of unknown function DUF1459. | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F38A5.9 | |||||||
Corresponding_transcript | F38A5.9.1 | ||||||||
Associated_feature | WBsf646027 | ||||||||
WBsf228433 | |||||||||
WBsf228434 | |||||||||
Experimental_info | RNAi_result | WBRNAi00008764 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00025434 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00069426 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00085531 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00014533 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00046668 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00014526 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00014524 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00046674 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1018424 | ||||||||
Expr1150553 | |||||||||
Expr2014459 | |||||||||
Expr2032699 | |||||||||
Drives_construct | WBCnstr00026731 | ||||||||
Construct_product | WBCnstr00026731 | ||||||||
Microarray_results (11) | |||||||||
Expression_cluster (40) | |||||||||
Interaction (55) | |||||||||
Map_info | Map | IV | Position | 3.21286 | |||||
Positive | Positive_clone | F38A5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |