WormBase Tree Display for Gene: WBGene00018213
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| WBGene00018213 | SMap | S_parent | Sequence | CHROMOSOME_X | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | wdr-54 | Person_evidence | WBPerson10010 | |||||
| WBPerson10503 | |||||||||
| Sequence_name | F39H12.2 | ||||||||
| Molecular_name | F39H12.2 | ||||||||
| F39H12.2.1 | |||||||||
| CE40650 | |||||||||
| F39H12.2.2 | |||||||||
| Other_name | CELE_F39H12.2 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | wdr-54 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:00 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 12 Jan 2023 20:48:33 | WBPerson51134 | Name_change | CGC_name | wdr-54 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | wdr | ||||||||
| Allele (84) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (28) | |||||||||
| Paralog | WBGene00001248 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WBGene00008533 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Enriched in AWA and neurons based on tiling array; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-2; daf-12; and elt-2 based on tiling array; microarray; and RNA-seq studies. Is affected by nine chemicals including Tunicamycin; Psoralens; and allantoin based on microarray and RNA-seq studies. Human WDR54 enables protein homodimerization activity. Is predicted to encode a protein with the following domains: WD40/YVTN repeat-like-containing domain superfamily; WDR54; WD40 repeat; and WD40-repeat-containing domain superfamily. Is an ortholog of human WDR54 (WD repeat domain 54). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F39H12.2 | |||||||
| Corresponding_CDS_history | F39H12.2:wp169 | ||||||||
| Corresponding_transcript | F39H12.2.1 | ||||||||
| F39H12.2.2 | |||||||||
| Other_sequence | Oden_isotig23713 | ||||||||
| Acan_isotig15984 | |||||||||
| AS10647 | |||||||||
| JI175697.1 | |||||||||
| Associated_feature | WBsf662438 | ||||||||
| WBsf235284 | |||||||||
| WBsf235285 | |||||||||
| WBsf235286 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00008769 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00046799 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00031997 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1013164 | ||||||||
| Expr1150674 | |||||||||
| Expr2003510 | |||||||||
| Expr2021725 | |||||||||
| Drives_construct | WBCnstr00026695 | ||||||||
| Construct_product | WBCnstr00026695 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (108) | |||||||||
| Interaction | WBInteraction000197760 | ||||||||
| WBInteraction000270716 | |||||||||
| WBInteraction000318220 | |||||||||
| WBInteraction000346066 | |||||||||
| WBInteraction000376468 | |||||||||
| WBInteraction000411103 | |||||||||
| WBInteraction000424928 | |||||||||
| WBInteraction000553186 | |||||||||
| Map_info | Map | X | Position | -19.4916 | |||||
| Positive | Positive_clone | F39H12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
