WormBase Tree Display for Gene: WBGene00018379
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| WBGene00018379 | SMap | S_parent | Sequence | F43C11 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | F43C11.2 | |||||||
| Molecular_name | F43C11.2 | ||||||||
| F43C11.2.1 | |||||||||
| CE46593 | |||||||||
| Other_name | CELE_F43C11.2 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | F43C11.2 | ||||||||
| DB_info | Database | AceView | gene | 2C645 | |||||
| WormQTL | gene | WBGene00018379 | |||||||
| WormFlux | gene | WBGene00018379 | |||||||
| NDB | locus_tag | CELE_F43C11.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00018379|UniProtKB=Q9U5B4 | |||||||
| family | PTHR21453 | ||||||||
| NCBI | gene | 185696 | |||||||
| RefSeq | protein | NM_061851.5 | |||||||
| TREEFAM | TREEFAM_ID | TF322011 | |||||||
| TrEMBL | UniProtAcc | Q9U5B4 | |||||||
| UniProt_GCRP | UniProtAcc | Q9U5B4 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:00 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (86) | |||||||||
| Strain | WBStrain00036834 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog | WBGene00040996 | Caenorhabditis briggsae | From_analysis | WormBase-Compara | |||||
| WBGene00040997 | Caenorhabditis briggsae | From_analysis | WormBase-Compara | ||||||
| CBOVI.g1498 | Caenorhabditis bovis | From_analysis | WormBase-Compara | ||||||
| CBOVI.g8057 | Caenorhabditis bovis | From_analysis | WormBase-Compara | ||||||
| CSP38.g7933 | Caenorhabditis quiockensis | From_analysis | WormBase-Compara | ||||||
| chrII_pilon.g3660 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Paralog (88) | |||||||||
| Structured_description | Automated_description | Enriched in NSM; germ line; male-specific anatomical entity; and in male based on proteomic; tiling array; RNA-seq; and microarray studies. Is affected by several genes including rrf-3; eat-2; and tph-1 based on tiling array; RNA-seq; and microarray studies. Is affected by five chemicals including Psoralens; allantoin; and Sirolimus based on RNA-seq studies. Is predicted to encode a protein with the following domains: TRA-1 regulated and TRA-1 regulated protein R03H10.4. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F43C11.2 | |||||||
| Corresponding_CDS_history | F43C11.2:wp228 | ||||||||
| Corresponding_transcript | F43C11.2.1 | ||||||||
| Associated_feature | WBsf986933 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00014871 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00047170 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00032175 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1013435 | ||||||||
| Expr1151032 | |||||||||
| Expr2003664 | |||||||||
| Expr2021882 | |||||||||
| Microarray_results (13) | |||||||||
| Expression_cluster (53) | |||||||||
| SAGE_tag | SAGE:agaacacagt | Strand | Antisense | ||||||
| SAGE:tacattatat | Strand | Antisense | |||||||
| SAGE:gaaaagtaca | Strand | Antisense | |||||||
| SAGE:cttcattcga | Strand | Antisense | |||||||
| SAGE:actctgtgtt | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| Map_info | Positive | Positive_clone | F43C11 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | II | -13.8322 | |||||||
| Method | Gene |
