WormBase Tree Display for Gene: WBGene00018661
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| WBGene00018661 | SMap | S_parent | Sequence | F52C6 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | Sequence_name | F52C6.4 | |||||||
| Molecular_name | F52C6.4 | ||||||||
| F52C6.4.1 | |||||||||
| CE46397 | |||||||||
| F52C6.4.2 | |||||||||
| F52C6.4.3 | |||||||||
| Other_name | F52C6.k | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_F52C6.4 | Accession_evidence | NDB | BX284602 | ||||||
| Public_name | F52C6.4 | ||||||||
| DB_info | Database | AceView | gene | 2C179 | |||||
| WormQTL | gene | WBGene00018661 | |||||||
| WormFlux | gene | WBGene00018661 | |||||||
| NDB | locus_tag | CELE_F52C6.4 | |||||||
| NCBI | gene | 186086 | |||||||
| RefSeq | protein | NM_001393013.1 | |||||||
| TrEMBL | UniProtAcc | O44819 | |||||||
| UniProt_GCRP | UniProtAcc | O44819 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:00 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 12 Dec 2005 17:54:47 | WBPerson2970 | Name_change | CGC_name | math-32 | ||||
| 3 | 08 Jun 2007 11:44:06 | WBPerson2970 | Name_change | CGC_name | math-32 removed and added to WBGene0009135 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (98) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00033451 | ||||||||
| 00033452 | |||||||||
| 00033453 | |||||||||
| 00033454 | |||||||||
| 00033455 | |||||||||
| 00033456 | |||||||||
| Contained_in_operon | CEOP2056 | ||||||||
| Ortholog | WBGene00064427 | Caenorhabditis remanei | From_analysis | Inparanoid_8 | |||||
| WBGene00064426 | Caenorhabditis remanei | From_analysis | Inparanoid_8 | ||||||
| chrII_pilon.g3527 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Paralog | WBGene00003587 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WBGene00006725 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00006727 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00006728 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00018659 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00018660 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to enable protein tag activity and ubiquitin protein ligase binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in modification-dependent protein catabolic process and protein ubiquitination. Predicted to be part of cytosolic small ribosomal subunit. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F52C6.4 | |||||||
| Corresponding_CDS_history | F52C6.4:wp227 | ||||||||
| Corresponding_transcript | F52C6.4.1 | ||||||||
| F52C6.4.2 | |||||||||
| F52C6.4.3 | |||||||||
| Associated_feature | WBsf986849 | ||||||||
| WBsf986850 | |||||||||
| WBsf1011653 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00076457 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00047940 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00015379 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00047939 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00032598 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00061822 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1015851 | ||||||||
| Expr1151768 | |||||||||
| Expr2003983 | |||||||||
| Expr2022204 | |||||||||
| Microarray_results | SMD_F52C6.4 | ||||||||
| 181256_at | |||||||||
| Aff_F52C6.4 | |||||||||
| GPL14144_F52C6.4_299-358_0.903_2_A | |||||||||
| GPL19516_CGZ0023068 | |||||||||
| GPL21109_F52C6.4 | |||||||||
| GPL8673_F52C6_4P00602 | |||||||||
| GPL8673_F52C6_4P00625 | |||||||||
| GPL9450_F52C6.4 | |||||||||
| cea2.i.12877 | |||||||||
| Expression_cluster (73) | |||||||||
| Interaction | WBInteraction000181654 | ||||||||
| WBInteraction000190348 | |||||||||
| WBInteraction000191835 | |||||||||
| WBInteraction000378500 | |||||||||
| WBInteraction000417507 | |||||||||
| WBInteraction000446598 | |||||||||
| WBInteraction000460381 | |||||||||
| Map_info | Positive | Positive_clone | F52C6 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | II | -14.1347 | |||||||
| Reference | WBPaper00038491 | ||||||||
| Method | Gene |
