WormBase Tree Display for Gene: WBGene00018704
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WBGene00018704 | SMap | S_parent | Sequence | F52E4 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | ztf-13 | Person_evidence | WBPerson1997 | |||||
Sequence_name | F52E4.8 | ||||||||
Molecular_name | F52E4.8 | ||||||||
F52E4.8.1 | |||||||||
CE45177 | |||||||||
Other_name | CELE_F52E4.8 | Accession_evidence | NDB | BX284606 | |||||
Public_name | ztf-13 | ||||||||
DB_info | Database | AceView | gene | XD718 | |||||
WormQTL | gene | WBGene00018704 | |||||||
WormFlux | gene | WBGene00018704 | |||||||
NDB | locus_tag | CELE_F52E4.8 | |||||||
NCBI | gene | 186116 | |||||||
RefSeq | protein | NM_076130.4 | |||||||
TREEFAM | TREEFAM_ID | TF322945 | |||||||
TrEMBL | UniProtAcc | O01933 | |||||||
UniProt_GCRP | UniProtAcc | O01933 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:31:00 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 18 Apr 2008 09:32:24 | WBPerson2970 | Name_change | CGC_name | ztf-13 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | ztf | ||||||||
Allele (30) | |||||||||
RNASeq_FPKM (74) | |||||||||
Contained_in_operon | CEOPX179 | ||||||||
CEOP2737 | |||||||||
Ortholog (15) | |||||||||
Paralog | WBGene00019611 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
Structured_description | Automated_description | Enriched in several structures, including ABplaapaap; ABplpaaaap; ABplpappaa; ABpraapaap; and pharyngeal cell based on RNA-seq and single-cell RNA-seq studies. Is affected by several genes including daf-2; daf-12; and elt-2 based on RNA-seq; tiling array; and microarray studies. Is affected by nine chemicals including 1-methylnicotinamide; Cry5B; and Psoralens based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domain: Zinc finger C2H2-type. | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F52E4.8 | |||||||
Corresponding_CDS_history | F52E4.8:wp216 | ||||||||
Corresponding_transcript | F52E4.8.1 | ||||||||
Associated_feature | WBsf653807 | ||||||||
WBsf655638 | |||||||||
WBsf670277 | |||||||||
WBsf670278 | |||||||||
WBsf670279 | |||||||||
WBsf978785 | |||||||||
WBsf1004519 | |||||||||
WBsf1004520 | |||||||||
WBsf1022567 | |||||||||
WBsf237139 | |||||||||
Transcription_factor | WBTranscriptionFactor000824 | ||||||||
Experimental_info | RNAi_result | WBRNAi00048001 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00093026 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00107208 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00014229 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1020030 | ||||||||
Expr1038052 | |||||||||
Expr1151816 | |||||||||
Expr2018186 | |||||||||
Expr2036323 | |||||||||
Construct_product | WBCnstr00017343 | ||||||||
Microarray_results (11) | |||||||||
Expression_cluster (116) | |||||||||
Interaction | WBInteraction000504147 | ||||||||
WBInteraction000525639 | |||||||||
WBInteraction000526656 | |||||||||
WBInteraction000535138 | |||||||||
Map_info | Map | X | Position | -12.1711 | Error | 0.010668 | |||
Positive | Positive_clone | F52E4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |