WormBase Tree Display for Gene: WBGene00018725

WBGene00018725 SMap: S_parent: Sequence: F53A9
  Identity: Version: 2
    Name: CGC_name: kreg-1 Paper_evidence: WBPaper00042067
      Sequence_name: F53A9.2
      Molecular_name: F53A9.2
        F53A9.2.1
        CE02762
      Other_name: CELE_F53A9.2 Accession_evidence: NDB BX284606
      Public_name: kreg-1
    DB_info: Database: AceView gene XJ329
        WormQTL gene WBGene00018725
        WormFlux gene WBGene00018725
        NDB locus_tag CELE_F53A9.2
        Panther gene CAEEL|WormBase=WBGene00018725|UniProtKB=Q20689
          family PTHR31117
        NCBI gene 186143
        RefSeq protein NM_077072.6
        SwissProt UniProtAcc Q20689
        UniProt_GCRP UniProtAcc Q20689
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:00 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 20 Feb 2015 13:16:53 WBPerson2970 Name_change: CGC_name: kreg-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: kreg
    Allele (14)
    RNASeq_FPKM (74)
    GO_annotation: 00068796
      00068797
      00123768
    Ortholog (32)
    Paralog: WBGene00017726 Caenorhabditis elegans From_analysis: Panther
      WBGene00018724 Caenorhabditis elegans From_analysis: Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00018730 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00018729 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Concise_description: F53A9.2 encodes a novel protein containing polyhistidine stretches; F53A9.2 activity is required for the stress response to copper ion, and in that pathway, is a downstream target of the FOS-1 transcription factor that binds directly to the F53A9.2 promoter; an F53A9.2 promoter fusion is weakly expressed in the intestine, but expression is upregulated in the intestine following exposure to copper ion in a kgb-1-dependent manner. Paper_evidence: WBPaper00042067
          Curator_confirmed: WBPerson1843
          Date_last_updated: 29 Jan 2015 00:00:00
      Automated_description: Involved in stress response to copper ion. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F53A9.2
    Corresponding_transcript: F53A9.2.1
    Other_sequence (11)
    Associated_feature: WBsf236079
      WBsf236080
  Experimental_info: RNAi_result: WBRNAi00015460 Inferred_automatically: RNAi_primary
      WBRNAi00048059 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1151871
      Expr2012979
      Expr2031211
    Drives_construct: WBCnstr00017198
      WBCnstr00026315
    Construct_product: WBCnstr00026315
    Microarray_results (21)
    Expression_cluster (304)
    SAGE_tag: SAGE:atgatgatga Strand: Antisense
      SAGE:tccatacaga Strand: Sense
        Unambiguously_mapped
      SAGE:gccatcattttggacat Strand: Sense
        Unambiguously_mapped
      SAGE:ctcacctaaa Strand: Antisense
      SAGE:gccatcattt Strand: Sense
        Unambiguously_mapped
      SAGE:gaggaaacta Strand: Antisense
      SAGE:aacagttggtggtgcta Strand: Antisense
      SAGE:aacagttggt Strand: Antisense
    Interaction (18)
  Map_info: Map: X Position: 0.271423
    Positive: Positive_clone: F53A9 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00032126
    WBPaper00042067
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene