WormBase Tree Display for Gene: WBGene00018740

WBGene00018740 SMap: S_parent: Sequence: F53B3
  Identity: Version: 2
    Name: CGC_name: tra-4 Paper_evidence: WBPaper00028554
      Sequence_name: F53B3.1
      Molecular_name: F53B3.1
        F53B3.1.1
        CE28444
        F53B3.1.2
      Other_name: F53B3.e Curator_confirmed: WBPerson1983
          Remark: Old cosmid naming mapped via unique overlapping PCR_product on CDSs
        CELE_F53B3.1 Accession_evidence: NDB BX284606
      Public_name: tra-4
    DB_info: Database: AceView gene XD472
        WormQTL gene WBGene00018740
        WormFlux gene WBGene00018740
        NDB locus_tag CELE_F53B3.1
        Panther gene CAEEL|WormBase=WBGene00018740|UniProtKB=Q20709
          family PTHR24376
        NCBI gene 180575
        RefSeq protein NM_001383535.2
        SwissProt UniProtAcc Q20709
        TREEFAM TREEFAM_ID TF317495
        UniProt_GCRP UniProtAcc Q20709
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:00 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 16 Oct 2006 17:00:28 WBPerson2970 Name_change: CGC_name: tra-4
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: tra
    Allele (55)
    Strain: WBStrain00036389
    RNASeq_FPKM (74)
    GO_annotation (17)
    Ortholog (31)
    Paralog: WBGene00010264 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
      WBGene00003012 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00003044 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00003045 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00003046 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00013350 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00018833 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00304808 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Enables histone deacetylase binding activity. Involved in hermaphrodite somatic sex determination; negative regulation of vulval development; and regulation of gene expression. Located in nucleus. Expressed in several structures, including excretory cell and ventral nerve cord. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F53B3.1
    Corresponding_transcript: F53B3.1.1
      F53B3.1.2
    Other_sequence (70)
    Associated_feature: WBsf653782
      WBsf670001
      WBsf978429
      WBsf1004453
      WBsf1004454
      WBsf1022526
      WBsf1022527
      WBsf237117
      WBsf237118
    Transcription_factor: WBTranscriptionFactor000286
  Experimental_info: RNAi_result: WBRNAi00048082 Inferred_automatically: RNAi_primary
      WBRNAi00095056 Inferred_automatically: RNAi_primary
      WBRNAi00025581 Inferred_automatically: RNAi_primary
      WBRNAi00027361 Inferred_automatically: RNAi_primary
      WBRNAi00032671 Inferred_automatically: RNAi_primary
      WBRNAi00025580 Inferred_automatically: RNAi_primary
      WBRNAi00061972 Inferred_automatically: RNAi_primary
      WBRNAi00077600 Inferred_automatically: RNAi_primary
      WBRNAi00015479 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr4228
      Expr7579
      Expr1012879
      Expr1038069
      Expr1151892
      Expr2017478
      Expr2035617
    Drives_construct: WBCnstr00011840
      WBCnstr00012724
      WBCnstr00026304
    Construct_product: WBCnstr00011840
      WBCnstr00022553
      WBCnstr00026304
    Microarray_results (21)
    Expression_cluster (154)
    Interaction (75)
  Map_info: Map: X Position: -12.6905 Error: 0.003855
    Positive: Positive_clone: F53B3 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00027309
    WBPaper00028554
    WBPaper00038372
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene