WormBase Tree Display for Gene: WBGene00018749
expand all nodes | collapse all nodes | view schema
| WBGene00018749 | SMap | S_parent | Sequence | F53C3 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | ||||||||
| Name | Sequence_name | F53C3.5 | ||||||||
| Molecular_name | F53C3.5 | |||||||||
| Other_name | CELE_F53C3.5 | Accession_evidence | NDB | BX284602 | ||||||
| Public_name | F53C3.5 | |||||||||
| DB_info | Database | AceView | gene | 2E191 | ||||||
| WormQTL | gene | WBGene00018749 | ||||||||
| WormFlux | gene | WBGene00018749 | ||||||||
| NDB | locus_tag | CELE_F53C3.5 | ||||||||
| NCBI | gene | 186160 | ||||||||
| Species | Caenorhabditis elegans | |||||||||
| History | Version_change | 1 | 28 May 2004 13:31:00 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | |||
| 2 | 21 Sep 2017 13:58:42 | WBPerson1983 | Event | Changed_class | CDS | Pseudogene | ||||
| Status | Live | |||||||||
| Gene_info | Biotype | SO:0000336 | ||||||||
| Allele (40) | ||||||||||
| RNASeq_FPKM (74) | ||||||||||
| Contained_in_operon | CEOP2112 | |||||||||
| Ortholog | WBGene00190497 | Caenorhabditis brenneri | From_analysis | TreeFam | ||||||
| WBGene00147593 | Caenorhabditis brenneri | From_analysis | TreeFam | |||||||
| WBGene00121049 | Caenorhabditis japonica | From_analysis | TreeFam | |||||||
| WBGene00068624 | Caenorhabditis remanei | From_analysis | TreeFam | |||||||
| WBGene00095631 | Pristionchus pacificus | From_analysis | Inparanoid_8 | |||||||
| WBGene00038460 | Caenorhabditis briggsae | From_analysis | OMA | |||||||
| Paralog (15) | ||||||||||
| Structured_description | Automated_description | Enriched in neurons and ventral nerve cord based on tiling array; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-16; daf-2; and daf-12 based on microarray; tiling array; and RNA-seq studies. Is affected by sixteen chemicals including 1-methylnicotinamide; levamisole; and Cadmium Chloride based on RNA-seq and microarray studies. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | |||||||||
| WBPerson37462 | ||||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | |||||||||
| Molecular_info | Corresponding_CDS_history | F53C3.5:wp111 | ||||||||
| F53C3.5:wp261 | ||||||||||
| Corresponding_pseudogene | F53C3.5 | |||||||||
| Associated_feature | WBsf987404 | |||||||||
| WBsf221059 | ||||||||||
| WBsf221060 | ||||||||||
| Experimental_info | Expr_pattern | Expr1028048 | ||||||||
| Expr1038077 | ||||||||||
| Expr1151925 | ||||||||||
| Expr2004055 | ||||||||||
| Expr2022279 | ||||||||||
| Drives_construct | WBCnstr00026296 | |||||||||
| Construct_product | WBCnstr00026296 | |||||||||
| Microarray_results | SMD_F53C3.5 | |||||||||
| 182777_at | ||||||||||
| Aff_F53C3.5 | ||||||||||
| GPL14144_F53C3.5_439-498_0.898_5_A | ||||||||||
| GPL19516_CGZ0023429 | ||||||||||
| GPL21109_F53C3.5 | ||||||||||
| GPL8304_CE_WBGene00018749_A | ||||||||||
| GPL9450_F53C3.5 | ||||||||||
| cea2.i.12929 | ||||||||||
| Expression_cluster (147) | ||||||||||
| Interaction | WBInteraction000189520 | |||||||||
| WBInteraction000222983 | ||||||||||
| WBInteraction000249178 | ||||||||||
| WBInteraction000308692 | ||||||||||
| WBInteraction000329255 | ||||||||||
| WBInteraction000446889 | ||||||||||
| Map_info | Positive | Positive_clone | F53C3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Interpolated_map_position | II | -5.9852 | ||||||||
| Method | Gene |
