WormBase Tree Display for Gene: WBGene00018782
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| WBGene00018782 | SMap | S_parent | Sequence | F54A3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | cct-3 | Person_evidence | WBPerson567 | |||||
| Sequence_name | F54A3.3 | ||||||||
| Molecular_name | F54A3.3 | ||||||||
| F54A3.3.1 | |||||||||
| CE31540 | |||||||||
| Other_name | F54A3.f | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_F54A3.3 | Accession_evidence | NDB | BX284602 | ||||||
| Public_name | cct-3 | ||||||||
| DB_info | Database | AceView | gene | 2C531 | |||||
| WormQTL | gene | WBGene00018782 | |||||||
| WormFlux | gene | WBGene00018782 | |||||||
| NDB | locus_tag | CELE_F54A3.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00018782|UniProtKB=Q9N4J8 | |||||||
| family | PTHR11353 | ||||||||
| NCBI | gene | 173581 | |||||||
| RefSeq | protein | NM_061817.6 | |||||||
| SwissProt | UniProtAcc | Q9N4J8 | |||||||
| TREEFAM | TREEFAM_ID | TF105649 | |||||||
| UniProt_GCRP | UniProtAcc | Q9N4J8 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:00 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 09 Jan 2008 09:42:02 | WBPerson2970 | Name_change | CGC_name | cct-3 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cct | ||||||||
| Allele (228) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (14) | |||||||||
| Contained_in_operon | CEOP2725 | ||||||||
| Ortholog (37) | |||||||||
| Paralog | WBGene00000377 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00000378 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00000379 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00000380 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00000381 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00020391 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00021934 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00002025 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00004089 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | cct-3 encodes a putative gamma subunit of the eukaryotic cytosolic ('T complex') chaperonin, orthologous to human CCT3 (OMIM:600114); in early embryos, CCT-3 is required for normally fast microtubule elongation; CCT-3 is also required to repress SKN-1-dependent transcription of gst-4; in mass RNAi assays, CCT-3 is required for normal embryonic and larval viability, and for fertility. | Paper_evidence | WBPaper00005654 | |||||
| WBPaper00006395 | |||||||||
| WBPaper00025054 | |||||||||
| WBPaper00026660 | |||||||||
| WBPaper00031362 | |||||||||
| WBPaper00031363 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 14 Jan 2008 00:00:00 | ||||||||
| Automated_description | Predicted to enable unfolded protein binding activity. Predicted to be involved in protein folding. Predicted to be located in cytoplasm and microtubule. Predicted to be part of chaperonin-containing T-complex. Is an ortholog of human CCT3 (chaperonin containing TCP1 subunit 3). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F54A3.3 | |||||||
| Corresponding_CDS_history | F54A3.3:wp82 | ||||||||
| Corresponding_transcript | F54A3.3.1 | ||||||||
| Other_sequence (19) | |||||||||
| Associated_feature | WBsf657384 | ||||||||
| WBsf657385 | |||||||||
| WBsf986914 | |||||||||
| WBsf986915 | |||||||||
| WBsf1011694 | |||||||||
| WBsf1011695 | |||||||||
| WBsf220911 | |||||||||
| WBsf220912 | |||||||||
| WBsf220913 | |||||||||
| Experimental_info | RNAi_result (18) | ||||||||
| Expr_pattern | Expr1011243 | ||||||||
| Expr1038096 | |||||||||
| Expr1152015 | |||||||||
| Expr2009771 | |||||||||
| Expr2028011 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (135) | |||||||||
| Interaction (67) | |||||||||
| Map_info | Map | II | Position | -13.8379 | Error | 0.000779 | |||
| Positive | Positive_clone | F54A3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00035228 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00045625 | |||||||||
| WBPaper00049531 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00056909 | |||||||||
| WBPaper00061536 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
