WormBase Tree Display for Gene: WBGene00018815
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| WBGene00018815 | SMap | S_parent | Sequence | F54D12 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | F54D12.1 | |||||||
| Molecular_name | F54D12.1 | ||||||||
| F54D12.1.1 | |||||||||
| CE25903 | |||||||||
| Other_name | CELE_F54D12.1 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | F54D12.1 | ||||||||
| DB_info | Database | AceView | gene | 2B689 | |||||
| WormQTL | gene | WBGene00018815 | |||||||
| WormFlux | gene | WBGene00018815 | |||||||
| NDB | locus_tag | CELE_F54D12.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00018815|UniProtKB=O44835 | |||||||
| family | PTHR47629 | ||||||||
| NCBI | gene | 186238 | |||||||
| RefSeq | protein | NM_061562.3 | |||||||
| TREEFAM | TREEFAM_ID | TF343421 | |||||||
| TrEMBL | UniProtAcc | O44835 | |||||||
| UniProt_GCRP | UniProtAcc | O44835 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:00 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (25) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog | WBGene00064646 | Caenorhabditis remanei | From_analysis | TreeFam | |||||
| WBGene00159545 | Caenorhabditis brenneri | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| WBGene00064647 | Caenorhabditis remanei | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| WBGene00029324 | Caenorhabditis briggsae | From_analysis | OrthoMCL | ||||||
| WBGene00064645 | Caenorhabditis remanei | From_analysis | OMA | ||||||
| CSP21.g6726 | Caenorhabditis parvicauda | From_analysis | WormBase-Compara | ||||||
| chrII_pilon.g3341 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Paralog (116) | |||||||||
| Structured_description | Automated_description | Enriched in ADEshL; ADEshR; pm1; and pm2 based on single-cell RNA-seq studies. Is affected by several genes including eat-2; pgl-1; and glh-1 based on microarray; tiling array; and RNA-seq studies. Is affected by Acrylamide based on microarray studies. Is predicted to encode a protein with the following domains: PAN-like domain and PAN-3 domain. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F54D12.1 | |||||||
| Corresponding_CDS_history | F54D12.1:wp90 | ||||||||
| F54D12.1:wp111 | |||||||||
| Corresponding_transcript | F54D12.1.1 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00048298 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00032783 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00015609 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1011094 | ||||||||
| Expr1152098 | |||||||||
| Expr2004142 | |||||||||
| Expr2022366 | |||||||||
| Microarray_results (14) | |||||||||
| Expression_cluster (32) | |||||||||
| SAGE_tag | SAGE:ttcagcttca | Strand | Sense | ||||||
| Unambiguously_mapped | |||||||||
| Interaction (51) | |||||||||
| Map_info | Positive | Positive_clone | F54D12 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | II | -15.4586 | |||||||
| Method | Gene |
