WormBase Tree Display for Gene: WBGene00018833

WBGene00018833 SMap: S_parent: Sequence: CHROMOSOME_III
  Identity: Version: 2
    Name: CGC_name: ztf-1 Person_evidence: WBPerson1997
      Sequence_name: F54F2.5
      Molecular_name: F54F2.5
        F54F2.5.1
        CE25004
      Other_name: CELE_F54F2.5 Accession_evidence: NDB BX284603
      Public_name: ztf-1
    DB_info: Database: AceView gene 3J878
        WormQTL gene WBGene00018833
        SignaLink protein WBGene00018833
        WormFlux gene WBGene00018833
        NDB locus_tag CELE_F54F2.5
        Panther gene CAEEL|WormBase=WBGene00018833|UniProtKB=P34450
          family PTHR24408
        NCBI gene 176236
        RefSeq protein NM_066541.5
        SwissProt UniProtAcc P34450
        UniProt_GCRP UniProtAcc P34450
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:00 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 18 Jul 2005 13:34:00 WBPerson2970 Name_change: CGC_name: ztf-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: ztf
    Allele (77)
    Strain: WBStrain00030069
    RNASeq_FPKM (74)
    GO_annotation: 00042416
      00042417
      00042418
      00042419
      00042420
      00042421
      00042422
      00042423
    Ortholog (22)
    Paralog: WBGene00003012 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00003044 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00003045 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00003046 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00010264 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00013350 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00018740 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00304808 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Concise_description: ztf-1 encodes a zinc-finger transcription factor; although a ztf-1 deletion mutation, tm2652, is homozygous viable, loss of ztf-1 activity via RNAi can partially suppress the embryonic lethality seen in par-2(it5ts) animals; expression of a ZTF-1::GFP fusion is restricted to a few head neurons in adults, while GFP is more broadly expressed, including in pharyngeal neurons and in the intestine, throughout development in animals carrying a ztf-1::gfp promoter fusion; ZTF-1 binds to a number of digestive tract promoter sequences in vitro. Paper_evidence: WBPaper00027683
            WBPaper00027724
          Curator_confirmed: WBPerson1843
          Date_last_updated: 12 Feb 2008 00:00:00
      Automated_description: Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Expressed in intestine and pharyngeal neurons. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F54F2.5
    Corresponding_CDS_history: F54F2.5b:wp275
    Corresponding_transcript: F54F2.5.1
    Associated_feature: WBsf667187
      WBsf667188
      WBsf978447
      WBsf993461
      WBsf993462
      WBsf1015479
      WBsf1015480
      WBsf227188
    Transcription_factor: WBTranscriptionFactor000239
  Experimental_info: RNAi_result: WBRNAi00005529 Inferred_automatically: RNAi_primary
      WBRNAi00048368 Inferred_automatically: RNAi_primary
      WBRNAi00077109 Inferred_automatically: RNAi_primary
      WBRNAi00032811 Inferred_automatically: RNAi_primary
      WBRNAi00015651 Inferred_automatically: RNAi_primary
      WBRNAi00114760 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr3935
      Expr1013646
      Expr1038124
      Expr1152159
      Expr1200059
      Expr2018192
      Expr2036329
    Drives_construct: WBCnstr00011759
      WBCnstr00026256
    Construct_product: WBCnstr00016874
      WBCnstr00017945
      WBCnstr00017968
      WBCnstr00026256
    Microarray_results (26)
    Expression_cluster (141)
    Interaction (143)
  Map_info: Map: III Position: -0.052045 Error: 0.001032
    Positive: Positive_clone: F54F2 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00027724
    WBPaper00060662
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene