WormBase Tree Display for Gene: WBGene00019079
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| WBGene00019079 | SMap | S_parent | Sequence | F59A3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | rpa-4 | |||||||
| Sequence_name | F59A3.6 | ||||||||
| Molecular_name (17) | |||||||||
| Other_name | CELE_F59A3.6 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | rpa-4 | ||||||||
| DB_info | Database | AceView | gene | 1G78C | |||||
| 1G78 | |||||||||
| WormQTL | gene | WBGene00019079 | |||||||
| WormFlux | gene | WBGene00019079 | |||||||
| NDB | locus_tag | CELE_F59A3.6 | |||||||
| Panther | gene | CAEEL|EnsemblGenome=WBGene00019079|UniProtKB=P91356 | |||||||
| family | PTHR13989 | ||||||||
| NCBI | gene | 186576 | |||||||
| RefSeq | protein | NM_001392313.1 | |||||||
| NM_001380262.1 | |||||||||
| NM_001380260.1 | |||||||||
| NM_001313492.3 | |||||||||
| NM_001380261.1 | |||||||||
| NR_132558.1 | |||||||||
| TrEMBL | UniProtAcc | Q8I7G2 | |||||||
| P91356 | |||||||||
| A0A0K3AU77 | |||||||||
| UniProt_GCRP | UniProtAcc | P91356 | |||||||
| RNAcentral | URSid | URS0000858321 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:01 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 08 Mar 2010 11:14:55 | WBPerson2970 | Name_change | CGC_name | rpa-4 | ||||
| 3 | 13 Nov 2014 14:58:10 | WBPerson1983 | Event | Acquires_merge | WBGene00019078 | ||||
| Acquires_merge | WBGene00019078 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rpa | ||||||||
| Allele | WBVar01282808 | ||||||||
| WBVar01499786 | |||||||||
| WBVar00638575 | |||||||||
| WBVar00638576 | |||||||||
| WBVar00638577 | |||||||||
| WBVar00638578 | |||||||||
| WBVar00251323 | |||||||||
| WBVar01498959 | |||||||||
| Strain | WBStrain00051041 | ||||||||
| WBStrain00051033 | |||||||||
| WBStrain00051036 | |||||||||
| WBStrain00051034 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00050747 | ||||||||
| 00050748 | |||||||||
| 00050749 | |||||||||
| 00050750 | |||||||||
| 00050751 | |||||||||
| 00050752 | |||||||||
| 00050753 | |||||||||
| 00050754 | |||||||||
| Ortholog (28) | |||||||||
| Paralog | WBGene00019767 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| Structured_description | Concise_description | rpa-4 encodes an ortholog of human replication protein A2 (HGNC:RPA2); rpa-4 appears to be a complexed/merged loci; it would seem that rpa-4 has undergone a partial duplication to create what was previously named rpa-3 (isoforms e/f of the current annotation) but this duplication event did not include any of the promoter/regulatory regions; transcription now appears to start at the 5' end of rpa-4 and continue all the way through to the end of the partial duplicate in a single transcript; there is a possibility that the transcript(s) produced at this loci are processed into a series of isoforms/alternate gene products but this would need to be confirmed in the laboratory. | Curator_confirmed | WBPerson324 | |||||
| WBPerson1983 | |||||||||
| Date_last_updated | 29 Oct 2014 00:00:00 | ||||||||
| Automated_description | Predicted to enable single-stranded DNA binding activity and telomeric DNA binding activity. Predicted to be involved in DNA replication; double-strand break repair via homologous recombination; and nucleotide-excision repair. Predicted to be located in chromosome, telomeric region and site of double-strand break. Predicted to be part of DNA replication factor A complex. Is an ortholog of human RPA2 (replication protein A2) and RPA4 (replication protein A4). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F59A3.6a | |||||||
| F59A3.6c | |||||||||
| F59A3.6d | |||||||||
| F59A3.6e | |||||||||
| F59A3.6f | |||||||||
| Corresponding_transcript | F59A3.6b | ||||||||
| F59A3.6a.1 | |||||||||
| F59A3.6a.2 | |||||||||
| F59A3.6a.3 | |||||||||
| F59A3.6a.4 | |||||||||
| F59A3.6c.1 | |||||||||
| F59A3.6d.1 | |||||||||
| F59A3.6e.1 | |||||||||
| F59A3.6f.1 | |||||||||
| Other_sequence | CRC00661_1 | ||||||||
| CBC05818_1 | |||||||||
| CR01805 | |||||||||
| Associated_feature | WBsf649171 | ||||||||
| WBsf219443 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00003858 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00049104 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00049105 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00003857 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1013454 | ||||||||
| Expr1018492 | |||||||||
| Expr1038240 | |||||||||
| Expr1152847 | |||||||||
| Expr1152848 | |||||||||
| Expr2015416 | |||||||||
| Expr2033651 | |||||||||
| Drives_construct | WBCnstr00026080 | ||||||||
| WBCnstr00037828 | |||||||||
| Construct_product | WBCnstr00026080 | ||||||||
| WBCnstr00037828 | |||||||||
| Microarray_results (29) | |||||||||
| Expression_cluster (81) | |||||||||
| Interaction (66) | |||||||||
| Map_info | Map | I | Position | 0.072369 | Error | 0.006034 | |||
| Positive | Positive_clone | F59A3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00037751 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00060907 | |||||||||
| WBPaper00064312 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
