WormBase Tree Display for Gene: WBGene00019130
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| WBGene00019130 | SMap | S_parent | Sequence | F59H5 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | gbas-1 | Person_evidence | WBPerson330 | |||||
| Sequence_name | F59H5.1 | ||||||||
| Molecular_name | F59H5.1 | ||||||||
| F59H5.1.1 | |||||||||
| CE31963 | |||||||||
| Other_name | CELE_F59H5.1 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | gbas-1 | ||||||||
| DB_info | Database | AceView | gene | 2C803 | |||||
| WormQTL | gene | WBGene00019130 | |||||||
| WormFlux | gene | WBGene00019130 | |||||||
| NDB | locus_tag | CELE_F59H5.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00019130|UniProtKB=Q9TZI4 | |||||||
| family | PTHR38627 | ||||||||
| NCBI | gene | 173603 | |||||||
| RefSeq | protein | NM_061884.7 | |||||||
| SwissProt | UniProtAcc | Q9TZI4 | |||||||
| TREEFAM | TREEFAM_ID | TF322681 | |||||||
| UniProt_GCRP | UniProtAcc | Q9TZI4 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:01 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 03 Aug 2015 10:54:46 | WBPerson2970 | Name_change | CGC_name | gbas-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | gbas | ||||||||
| Allele (331) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00098049 | ||||||||
| 00098050 | |||||||||
| 00098051 | |||||||||
| 00098052 | |||||||||
| 00098053 | |||||||||
| Ortholog (19) | |||||||||
| Paralog | WBGene00007094 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00009233 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WormBase-Compara | |||||||||
| WBGene00011047 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00020464 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00022398 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Structured_description | Concise_description | F59H5.1 encodes an unfamiliar protein with a low-complexity N-terminal region and a C-terminal DUF545 motif (of unknown function, found solely in nematode proteins); F59H5.1 is expressed in neuronal head ganglia, intestinal cells, hypodermal cells, and coelomocytes, with strong expression in embryos; F59H5.1 has no obvious function or phenotype in RNAi assays, whether in a normal background or in goa-1(-) or goa-1(gf) mutant backgrounds. | Paper_evidence | WBPaper00006194 | |||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Enables G-protein alpha-subunit binding activity and guanyl-nucleotide exchange factor activity. Involved in small GTPase mediated signal transduction. Expressed in several structures, including GLR; coelomocyte; distal tip cell; intestine; and neurons. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F59H5.1 | |||||||
| Corresponding_CDS_history | F59H5.1:wp86 | ||||||||
| Corresponding_transcript | F59H5.1.1 | ||||||||
| Other_sequence | HBC11088_1 | ||||||||
| HC06711 | |||||||||
| FC809950.1 | |||||||||
| MJ03528 | |||||||||
| DW718534.1 | |||||||||
| MJ03038 | |||||||||
| FF682117.1 | |||||||||
| JI466642.1 | |||||||||
| Associated_feature (19) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00016147 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00063364 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00103412 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00000962 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00049239 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00063376 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00049240 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00033229 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr2755 | ||||||||
| Expr12631 | |||||||||
| Expr1024377 | |||||||||
| Expr1038260 | |||||||||
| Expr1152980 | |||||||||
| Expr2011954 | |||||||||
| Expr2030191 | |||||||||
| Drives_construct | WBCnstr00010935 | ||||||||
| WBCnstr00022339 | |||||||||
| WBCnstr00026042 | |||||||||
| Construct_product | WBCnstr00010935 | ||||||||
| WBCnstr00026042 | |||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (100) | |||||||||
| Interaction | WBInteraction000258881 | ||||||||
| WBInteraction000462078 | |||||||||
| WBInteraction000541027 | |||||||||
| WBInteraction000542823 | |||||||||
| WBInteraction000542828 | |||||||||
| WBInteraction000549783 | |||||||||
| WBInteraction000556359 | |||||||||
| WBInteraction000575385 | |||||||||
| Map_info | Map | II | Position | -12.7111 | |||||
| Positive | Positive_clone | F59H5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00048975 | ||||||||
| WBPaper00056687 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
