WormBase Tree Display for Gene: WBGene00019535
expand all nodes | collapse all nodes | view schema
| WBGene00019535 | SMap | S_parent | Sequence | K08D10 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | tsen-34 | Person_evidence | WBPerson236 | |||||
| Sequence_name | K08D10.12 | ||||||||
| Molecular_name | K08D10.12a | ||||||||
| K08D10.12a.1 | |||||||||
| CE31711 | |||||||||
| K08D10.12b | |||||||||
| CE48992 | |||||||||
| K08D10.12c | |||||||||
| CE52973 | |||||||||
| K08D10.12b.1 | |||||||||
| K08D10.12c.1 | |||||||||
| Other_name | CELE_K08D10.12 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | tsen-34 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:01 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 18 Nov 2014 11:51:19 | WBPerson2970 | Name_change | CGC_name | tsen-34 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | tsen | ||||||||
| Allele (43) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00003685 | ||||||||
| 00003686 | |||||||||
| 00084467 | |||||||||
| 00084468 | |||||||||
| 00084469 | |||||||||
| 00084470 | |||||||||
| 00124370 | |||||||||
| 00124371 | |||||||||
| 00124372 | |||||||||
| Contained_in_operon | CEOP4116 | ||||||||
| Ortholog (23) | |||||||||
| Structured_description | Concise_description | K08D10.12 encodes a putative tRNA 3'-site splicing endonuclease subunit, orthologous to human TSEN34 and budding yeast SEN34; K08D10.12 is coexpressed (as is DNJ-15) with the paralogous small nuclear ribonucleoprotein (snRNP)-associated proteins RNP-2/U1A and RNP-3/U2B | Paper_evidence | WBPaper00029444 | |||||
| WBPaper00029445 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 06 Jun 2007 00:00:00 | ||||||||
| Automated_description | Predicted to enable tRNA-intron endonuclease activity. Predicted to be involved in tRNA-type intron splice site recognition and cleavage. Predicted to be located in nucleus. Human ortholog(s) of this gene implicated in pontocerebellar hypoplasia type 2C. Is an ortholog of human TSEN34 (tRNA splicing endonuclease subunit 34). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0060269 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:15506) | ||||
| Molecular_info | Corresponding_CDS | K08D10.12a | |||||||
| K08D10.12b | |||||||||
| K08D10.12c | |||||||||
| Corresponding_transcript | K08D10.12a.1 | ||||||||
| K08D10.12b.1 | |||||||||
| K08D10.12c.1 | |||||||||
| Associated_feature | WBsf660075 | ||||||||
| WBsf996199 | |||||||||
| WBsf996200 | |||||||||
| WBsf1017201 | |||||||||
| WBsf1017202 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00050252 | Inferred_automatically | RNAi_primary | |||||
| Expr_pattern | Expr1022194 | ||||||||
| Expr1038440 | |||||||||
| Expr1153947 | |||||||||
| Expr2017534 | |||||||||
| Expr2035672 | |||||||||
| Drives_construct | WBCnstr00025775 | ||||||||
| Construct_product | WBCnstr00025775 | ||||||||
| Microarray_results (16) | |||||||||
| Expression_cluster (55) | |||||||||
| SAGE_tag | SAGE:ggcggctgat | Strand | Antisense | ||||||
| SAGE:agattttaga | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:tctgcctaaa | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:tctgcctaaaccgaaat | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:agattttagaagttccg | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| Interaction | WBInteraction000040090 | ||||||||
| WBInteraction000417403 | |||||||||
| WBInteraction000428668 | |||||||||
| WBInteraction000428669 | |||||||||
| Map_info | Map | IV | Position | -0.26092 | |||||
| Positive | Positive_clone | K08D10 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00055090 | ||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
