WormBase Tree Display for Gene: WBGene00019762
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| WBGene00019762 | SMap | S_parent | Sequence | M03F8 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | syf-3 | |||||||
| Sequence_name | M03F8.3 | ||||||||
| Molecular_name | M03F8.3a | ||||||||
| M03F8.3a.1 | |||||||||
| CE28622 | |||||||||
| M03F8.3b | |||||||||
| CE41919 | |||||||||
| M03F8.3b.1 | |||||||||
| Other_name | phi-12 | Person_evidence | WBPerson2582 | ||||||
| CELE_M03F8.3 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | syf-3 | ||||||||
| DB_info | Database | AceView | gene | 5G423 | |||||
| WormQTL | gene | WBGene00019762 | |||||||
| WormFlux | gene | WBGene00019762 | |||||||
| NDB | locus_tag | CELE_M03F8.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00019762|UniProtKB=A9D4S6 | |||||||
| family | PTHR11246 | ||||||||
| NCBI | gene | 178979 | |||||||
| RefSeq | protein | NM_072146.6 | |||||||
| NM_001129507.5 | |||||||||
| TREEFAM | TREEFAM_ID | TF300305 | |||||||
| TrEMBL | UniProtAcc | A9D4S6 | |||||||
| O16376 | |||||||||
| UniProt_GCRP | UniProtAcc | A9D4S6 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:02 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 17 Mar 2005 13:54:35 | WBPerson2970 | Name_change | Other_name | phi-12 | ||||
| 3 | 11 Mar 2021 09:37:10 | WBPerson1983 | Name_change | CGC_name | syf-3 | ||||
| Other_name | phi-12 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | syf | ||||||||
| Allele (56) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00005476 | ||||||||
| 00005477 | |||||||||
| 00005478 | |||||||||
| 00005479 | |||||||||
| 00005480 | |||||||||
| 00124535 | |||||||||
| 00124536 | |||||||||
| Contained_in_operon | CEOP5092 | ||||||||
| Ortholog (39) | |||||||||
| Paralog | WBGene00013343 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00016837 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to be involved in spliceosomal complex assembly. Predicted to be part of Prp19 complex; U2-type catalytic step 2 spliceosome; and post-mRNA release spliceosomal complex. Human ortholog(s) of this gene implicated in basal cell carcinoma. Is an ortholog of human CRNKL1 (crooked neck pre-mRNA splicing factor 1). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:2513 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:15762) | ||||
| Molecular_info | Corresponding_CDS | M03F8.3a | |||||||
| M03F8.3b | |||||||||
| Corresponding_CDS_history | M03F8.3:wp185 | ||||||||
| Corresponding_transcript | M03F8.3a.1 | ||||||||
| M03F8.3b.1 | |||||||||
| Other_sequence (67) | |||||||||
| Associated_feature | WBsf1000123 | ||||||||
| WBsf231816 | |||||||||
| Experimental_info | RNAi_result (16) | ||||||||
| Expr_pattern | Chronogram2058 | ||||||||
| Expr6418 | |||||||||
| Expr1017250 | |||||||||
| Expr1038548 | |||||||||
| Expr1154576 | |||||||||
| Expr2005183 | |||||||||
| Expr2023403 | |||||||||
| Drives_construct | WBCnstr00002162 | ||||||||
| WBCnstr00025613 | |||||||||
| Construct_product | WBCnstr00025613 | ||||||||
| Microarray_results (23) | |||||||||
| Expression_cluster (99) | |||||||||
| Interaction (139) | |||||||||
| Map_info | Map | V | Position | -0.731929 | |||||
| Positive | Positive_clone | M03F8 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00035228 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00041771 | |||||||||
| WBPaper00045396 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | [210310 pad] Moved the existing CGC to other name following gene name update. Previously reported as phi-12 by Ellen Nollen | Person_evidence | WBPerson2582 | ||||||
| Curator_confirmed | WBPerson1983 | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
