WormBase Tree Display for Gene: WBGene00019821

WBGene00019821 SMap: S_parent: Sequence: R02D3
  Identity: Version: 2
    Name: CGC_name: gtf-2H1
      Sequence_name: R02D3.3
      Molecular_name: R02D3.3a
        R02D3.3a.1
        CE36601
        R02D3.3b
        CE48626
        R02D3.3b.1
      Other_name: CELE_R02D3.3 Accession_evidence: NDB BX284604
      Public_name: gtf-2H1
    DB_info: Database: AceView gene 4A980
        WormQTL gene WBGene00019821
        WormFlux gene WBGene00019821
        NDB locus_tag CELE_R02D3.3
        Panther gene CAEEL|WormBase=WBGene00019821|UniProtKB=O44499
          family PTHR12856
        NCBI gene 176838
        RefSeq protein NM_001379998.1
            NM_067479.6
        TrEMBL UniProtAcc O44499
            U4PCA7
        UniProt_GCRP UniProtAcc O44499
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:02 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 05 Jul 2018 12:31:10 WBPerson1983 Name_change: CGC_name: gtf-2H1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: gtf
    Allele (81)
    RNASeq_FPKM (74)
    GO_annotation: 00032551
      00032552
      00032553
      00032554
      00032555
      00032556
      00032557
      00124586
      00124587
      00124588
    Contained_in_operon: CEOP4008
    Ortholog (32)
    Structured_description: Automated_description: Predicted to be involved in DNA repair; transcription by RNA polymerase I; and transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of transcription factor TFIIH core complex and transcription factor TFIIH holo complex. Expressed widely. Is an ortholog of human GTF2H1 (general transcription factor IIH subunit 1). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: R02D3.3a
      R02D3.3b
    Corresponding_CDS_history: R02D3.3:wp122
    Corresponding_transcript: R02D3.3a.1
      R02D3.3b.1
    Other_sequence (57)
    Associated_feature (12)
  Experimental_info: RNAi_result: WBRNAi00082440 Inferred_automatically: RNAi_primary
      WBRNAi00111674 Inferred_automatically: RNAi_primary
      WBRNAi00034528 Inferred_automatically: RNAi_primary
      WBRNAi00009025 Inferred_automatically: RNAi_primary
      WBRNAi00082704 Inferred_automatically: RNAi_primary
      WBRNAi00026011 Inferred_automatically: RNAi_primary
      WBRNAi00051124 Inferred_automatically: RNAi_primary
      WBRNAi00071391 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr16019
      Expr1021734
      Expr1038588
      Expr1154833
      Expr2005314
      Expr2023534
    Microarray_results (21)
    Expression_cluster (85)
    Interaction (129)
  Map_info: Map: IV Position: -26.8017
    Positive: Positive_clone: R02D3 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00029038
    WBPaper00038491
    WBPaper00055090
    WBPaper00062203
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene