WormBase Tree Display for Gene: WBGene00019864
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| WBGene00019864 | SMap | S_parent | Sequence | R04A9 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | ceh-93 | Person_evidence | WBPerson83 | |||||
| Sequence_name | R04A9.5 | ||||||||
| Molecular_name | R04A9.5 | ||||||||
| R04A9.5.1 | |||||||||
| CE45204 | |||||||||
| Other_name | CELE_R04A9.5 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | ceh-93 | ||||||||
| DB_info | Database | AceView | gene | XB4 | |||||
| WormQTL | gene | WBGene00019864 | |||||||
| WormFlux | gene | WBGene00019864 | |||||||
| NDB | locus_tag | CELE_R04A9.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00019864|UniProtKB=Q86DC2 | |||||||
| family | PTHR24324 | ||||||||
| NCBI | gene | 180394 | |||||||
| RefSeq | protein | NM_075694.10 | |||||||
| TrEMBL | UniProtAcc | Q86DC2 | |||||||
| UniProt_GCRP | UniProtAcc | Q86DC2 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:02 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 30 Sep 2011 16:40:16 | WBPerson2970 | Name_change | CGC_name | ceh-93 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ceh | ||||||||
| Allele (61) | |||||||||
| Strain | WBStrain00003447 | ||||||||
| WBStrain00049288 | |||||||||
| WBStrain00049292 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (11) | |||||||||
| Ortholog (20) | |||||||||
| Paralog | WBGene00004011 | Caenorhabditis elegans | From_analysis | Panther | |||||
| Structured_description | Concise_description | ceh-93 is a divergent homeobox gene; it encodes one highly divergent double-homeodomain motif (named Hochob) and two divergent homeodomains; most homeodomain proteins bind DNA and function as transcription factors; ceh-93 is expressed in the seam cell, intestine, and the body wall musculature. | Paper_evidence | WBPaper00046864 | |||||
| WBPaper00006525 | |||||||||
| WBPaper00029055 | |||||||||
| WBPaper00037950 | |||||||||
| WBPaper00045521 | |||||||||
| Person_evidence | WBPerson83 | ||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 19 Apr 2017 00:00:00 | ||||||||
| Automated_description | Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in cell differentiation and regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Expressed in ADLL; ADLR; and seam cell. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | R04A9.5 | |||||||
| Corresponding_CDS_history | R04A9.5:wp154 | ||||||||
| R04A9.5:wp176 | |||||||||
| R04A9.5:wp188 | |||||||||
| R04A9.5:wp216 | |||||||||
| R04A9.5a:wp142 | |||||||||
| R04A9.5b:wp142 | |||||||||
| Corresponding_transcript | R04A9.5.1 | ||||||||
| Associated_feature | WBsf653642 | ||||||||
| WBsf670050 | |||||||||
| WBsf978278 | |||||||||
| WBsf982099 | |||||||||
| WBsf1003766 | |||||||||
| WBsf1022112 | |||||||||
| WBsf236917 | |||||||||
| Transcription_factor | WBTranscriptionFactor000333 | ||||||||
| Experimental_info | Expr_pattern (11) | ||||||||
| Drives_construct | WBCnstr00003910 | ||||||||
| WBCnstr00012775 | |||||||||
| WBCnstr00042448 | |||||||||
| WBCnstr00042452 | |||||||||
| Construct_product | WBCnstr00016542 | ||||||||
| WBCnstr00016555 | |||||||||
| WBCnstr00021781 | |||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (99) | |||||||||
| Interaction (262) | |||||||||
| Map_info | Map | X | Position | -19.9651 | |||||
| Positive | Positive_clone | R04A9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027258 | ||||||||
| WBPaper00027309 | |||||||||
| WBPaper00058742 | |||||||||
| WBPaper00060123 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
