WormBase Tree Display for Gene: WBGene00019928
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| WBGene00019928 | SMap | S_parent | Sequence | R07C3 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 4 | ||||||||
| Name | CGC_name | clec-44 | Person_evidence | WBPerson655 | ||||||
| Sequence_name | R07C3.12 | |||||||||
| Molecular_name | R07C3.12 | |||||||||
| Other_name | CELE_R07C3.12 | Accession_evidence | NDB | BX284602 | ||||||
| Public_name | clec-44 | |||||||||
| DB_info | Database | AceView | gene | 2B208 | ||||||
| WormQTL | gene | WBGene00019928 | ||||||||
| WormFlux | gene | WBGene00019928 | ||||||||
| NDB | locus_tag | CELE_R07C3.12 | ||||||||
| NCBI | gene | 187671 | ||||||||
| Species | Caenorhabditis elegans | |||||||||
| History | Version_change | 1 | 28 May 2004 13:31:02 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | |||
| 2 | 29 Apr 2005 13:53:46 | WBPerson2970 | Name_change | CGC_name | clec-44 | |||||
| 3 | 04 Nov 2015 11:48:13 | WBPerson1983 | Event | Split_into | WBGene00269338 | |||||
| 4 | 21 Nov 2019 15:08:17 | WBPerson4025 | Event | Changed_class | CDS | Pseudogene | ||||
| Split_into | WBGene00269338 | |||||||||
| Status | Live | |||||||||
| Gene_info | Biotype | SO:0000336 | ||||||||
| Gene_class | clec | |||||||||
| Allele (153) | ||||||||||
| RNASeq_FPKM (74) | ||||||||||
| Ortholog | WBGene00158623 | Caenorhabditis brenneri | From_analysis | TreeFam | ||||||
| WBGene00138451 | Caenorhabditis japonica | From_analysis | TreeFam | |||||||
| WBGene00148079 | Caenorhabditis brenneri | From_analysis | Inparanoid_8 | |||||||
| WBGene00056557 | Caenorhabditis remanei | From_analysis | Inparanoid_8 | |||||||
| Paralog (40) | ||||||||||
| Structured_description | Automated_description | Is affected by several genes including eat-2; elt-2; and sir-2.1 based on tiling array; microarray; and RNA-seq studies. Is affected by six chemicals including Psoralens; allantoin; and Sirolimus based on RNA-seq and microarray studies. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | |||||||||
| WBPerson37462 | ||||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | |||||||||
| Molecular_info | Corresponding_CDS_history | R07C3.12:wp149 | ||||||||
| R07C3.12:wp237 | ||||||||||
| R07C3.12:wp274 | ||||||||||
| Corresponding_pseudogene | R07C3.12 | |||||||||
| Associated_feature | WBsf986525 | |||||||||
| WBsf986526 | ||||||||||
| WBsf1011460 | ||||||||||
| WBsf222641 | ||||||||||
| Experimental_info | Expr_pattern | Expr1013666 | ||||||||
| Expr1155137 | ||||||||||
| Expr2010177 | ||||||||||
| Expr2028419 | ||||||||||
| Microarray_results | SMD_R07C3.12 | |||||||||
| 186398_at | ||||||||||
| Aff_R07C3.12 | ||||||||||
| GPL19516_CGZ0031267 | ||||||||||
| GPL21109_R07C3.12 | ||||||||||
| GPL8673_R07C3_12P00802 | ||||||||||
| Expression_cluster (49) | ||||||||||
| Interaction | WBInteraction000519744 | |||||||||
| Map_info | Map | II | Position | -15.5859 | ||||||
| Positive | Positive_clone | R07C3 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||||
| Pseudo_map_position | ||||||||||
| Reference | WBPaper00038491 | |||||||||
| WBPaper00055090 | ||||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
