WormBase Tree Display for Gene: WBGene00019946
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| WBGene00019946 | SMap | S_parent | Sequence | R08C7 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | chat-1 | |||||||
| Sequence_name | R08C7.2 | ||||||||
| Molecular_name | R08C7.2a | ||||||||
| R08C7.2a.1 | |||||||||
| CE07425 | |||||||||
| R08C7.2c | |||||||||
| CE39610 | |||||||||
| R08C7.2d | |||||||||
| CE48798 | |||||||||
| R08C7.2b | |||||||||
| R08C7.2c.1 | |||||||||
| R08C7.2d.1 | |||||||||
| Other_name | CELE_R08C7.2 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | chat-1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:02 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 14 Jul 2011 16:54:03 | WBPerson2970 | Name_change | CGC_name | chat-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | chat | ||||||||
| Allele (39) | |||||||||
| Strain | WBStrain00036454 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (12) | |||||||||
| Contained_in_operon | CEOP4620 | ||||||||
| Ortholog (48) | |||||||||
| Paralog | WBGene00008969 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00012224 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to be involved in macromolecule localization. Predicted to be located in Golgi apparatus; endoplasmic reticulum; and plasma membrane. Expressed in several structures, including intestine. Is an ortholog of human TMEM30A (transmembrane protein 30A). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | R08C7.2a | |||||||
| R08C7.2c | |||||||||
| R08C7.2d | |||||||||
| Corresponding_CDS_history | R08C7.2b:wp253 | ||||||||
| Corresponding_transcript | R08C7.2b | ||||||||
| R08C7.2a.1 | |||||||||
| R08C7.2c.1 | |||||||||
| R08C7.2d.1 | |||||||||
| Other_sequence (73) | |||||||||
| Associated_feature (12) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00107875 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00034741 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00017578 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00027435 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00026064 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00051534 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr9236 | ||||||||
| Expr9237 | |||||||||
| Expr1018590 | |||||||||
| Expr1038661 | |||||||||
| Expr1155211 | |||||||||
| Expr2009952 | |||||||||
| Expr2028192 | |||||||||
| Drives_construct | WBCnstr00008063 | ||||||||
| WBCnstr00008067 | |||||||||
| WBCnstr00013843 | |||||||||
| WBCnstr00025475 | |||||||||
| Construct_product | WBCnstr00008063 | ||||||||
| WBCnstr00008067 | |||||||||
| WBCnstr00008203 | |||||||||
| WBCnstr00008204 | |||||||||
| WBCnstr00008212 | |||||||||
| WBCnstr00008217 | |||||||||
| WBCnstr00013843 | |||||||||
| WBCnstr00013844 | |||||||||
| WBCnstr00025475 | |||||||||
| Antibody | WBAntibody00002255 | ||||||||
| Microarray_results (36) | |||||||||
| Expression_cluster (92) | |||||||||
| Interaction (53) | |||||||||
| Map_info | Map | IV | Position | 0.31178 | Error | 0.015082 | |||
| Positive | Positive_clone | R08C7 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00037899 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00042055 | |||||||||
| WBPaper00053602 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
