WormBase Tree Display for Gene: WBGene00019969
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| WBGene00019969 | SMap | S_parent | Sequence | R08F11 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | ||||||||
| Name | CGC_name | fpn-1.3 | ||||||||
| Sequence_name | R08F11.6 | |||||||||
| Molecular_name | R08F11.6 | |||||||||
| Other_name | CELE_R08F11.6 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | fpn-1.3 | |||||||||
| DB_info | Database | AceView | gene | 5E269 | ||||||
| WormQTL | gene | WBGene00019969 | ||||||||
| WormFlux | gene | WBGene00019969 | ||||||||
| NDB | locus_tag | CELE_R08F11.6 | ||||||||
| NCBI | gene | 187707 | ||||||||
| Species | Caenorhabditis elegans | |||||||||
| History | Version_change | 1 | 28 May 2004 13:31:02 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | |||
| 2 | 26 Feb 2008 14:56:31 | WBPerson2970 | Name_change | CGC_name | fpn-1.3 | |||||
| 3 | 19 Apr 2016 10:53:42 | WBPerson4025 | Event | Changed_class | CDS | Pseudogene | ||||
| Status | Live | |||||||||
| Gene_info | Biotype | SO:0000336 | ||||||||
| Gene_class | fpn | |||||||||
| Allele (82) | ||||||||||
| RNASeq_FPKM (74) | ||||||||||
| Ortholog | WBGene00031799 | Caenorhabditis briggsae | From_analysis | OrthoMCL | ||||||
| OMA | ||||||||||
| WBGene00190492 | Caenorhabditis brenneri | From_analysis | Inparanoid_8 | |||||||
| WBGene00192482 | Caenorhabditis brenneri | From_analysis | Inparanoid_8 | |||||||
| Structured_description | Automated_description | Enriched in germ line based on RNA-seq studies. Is affected by several genes including clk-1; daf-18; and unc-30 based on microarray and RNA-seq studies. Is affected by Colistin and dafa#1 based on microarray studies. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | |||||||||
| WBPerson37462 | ||||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | |||||||||
| Molecular_info | Corresponding_CDS_history | R08F11.6:wp107 | ||||||||
| R08F11.6:wp253 | ||||||||||
| Corresponding_pseudogene | R08F11.6 | |||||||||
| Other_sequence | CRC07202_1 | |||||||||
| MIC07813_1 | ||||||||||
| CR03308 | ||||||||||
| Associated_feature | WBsf999687 | |||||||||
| WBsf999688 | ||||||||||
| Experimental_info | Expr_pattern | Expr1016164 | ||||||||
| Expr1155239 | ||||||||||
| Microarray_results (18) | ||||||||||
| Expression_cluster (39) | ||||||||||
| Interaction | WBInteraction000185840 | |||||||||
| WBInteraction000197495 | ||||||||||
| WBInteraction000241424 | ||||||||||
| WBInteraction000259154 | ||||||||||
| WBInteraction000266645 | ||||||||||
| WBInteraction000311993 | ||||||||||
| WBInteraction000357209 | ||||||||||
| WBInteraction000371770 | ||||||||||
| WBInteraction000417984 | ||||||||||
| Map_info | Map | V | Position | -7.99514 | Error | 0.001559 | ||||
| Positive | Positive_clone | R08F11 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||||
| Pseudo_map_position | ||||||||||
| Reference | WBPaper00038491 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
