WormBase Tree Display for Gene: WBGene00020095
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| WBGene00020095 | SMap | S_parent | Sequence | R144 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | smcr-8 | Person_evidence | WBPerson13451 | |||||
| WBPerson268 | |||||||||
| Sequence_name | R144.5 | ||||||||
| Molecular_name | R144.5 | ||||||||
| R144.5.1 | |||||||||
| CE31581 | |||||||||
| Other_name | CELE_R144.5 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | smcr-8 | ||||||||
| DB_info | Database | AceView | gene | 3G91 | |||||
| WormQTL | gene | WBGene00020095 | |||||||
| WormFlux | gene | WBGene00020095 | |||||||
| NDB | locus_tag | CELE_R144.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00020095|UniProtKB=Q09346 | |||||||
| family | PTHR31334 | ||||||||
| NCBI | gene | 187901 | |||||||
| RefSeq | protein | NM_065659.6 | |||||||
| SwissProt | UniProtAcc | Q09346 | |||||||
| TREEFAM | TREEFAM_ID | TF321892 | |||||||
| UniProt_GCRP | UniProtAcc | Q09346 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:02 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 16 Feb 2017 15:37:28 | WBPerson2970 | Name_change | CGC_name | smcr-8 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | smcr | ||||||||
| Allele (28) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00053436 | ||||||||
| 00053437 | |||||||||
| 00053438 | |||||||||
| 00053439 | |||||||||
| 00053440 | |||||||||
| Ortholog (30) | |||||||||
| Structured_description | Automated_description | Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be involved in autophagy. Predicted to be located in cytoplasm. Predicted to be part of guanyl-nucleotide exchange factor complex. Is an ortholog of human SMCR8 (SMCR8-C9orf72 complex subunit). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | R144.5 | |||||||
| Corresponding_CDS_history | R144.5:wp82 | ||||||||
| Corresponding_transcript | R144.5.1 | ||||||||
| Other_sequence | ACC06369_1 | ||||||||
| EY464263.1 | |||||||||
| CBC10377_1 | |||||||||
| CBC09571_1 | |||||||||
| Associated_feature | WBsf224835 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00051960 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00017861 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00005653 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1016098 | ||||||||
| Expr1038734 | |||||||||
| Expr1155605 | |||||||||
| Expr2015902 | |||||||||
| Expr2034135 | |||||||||
| Drives_construct | WBCnstr00025375 | ||||||||
| Construct_product | WBCnstr00025375 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (60) | |||||||||
| Interaction | WBInteraction000366963 | ||||||||
| WBInteraction000375820 | |||||||||
| WBInteraction000387161 | |||||||||
| WBInteraction000556192 | |||||||||
| WBInteraction000556193 | |||||||||
| WBInteraction000578597 | |||||||||
| Map_info | Map | III | Position | -2.2539 | |||||
| Positive | Positive_clone | R144 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00054449 | ||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
