WormBase Tree Display for Gene: WBGene00020286
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| WBGene00020286 | SMap | S_parent | Sequence | T06A10 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | gtsf-1 | Person_evidence | WBPerson1159 | |||||
| Sequence_name | T06A10.3 | ||||||||
| Molecular_name | T06A10.3a | ||||||||
| T06A10.3a.1 | |||||||||
| CE19560 | |||||||||
| T06A10.3b | |||||||||
| CE50652 | |||||||||
| T06A10.3c | |||||||||
| CE50673 | |||||||||
| T06A10.3b.1 | |||||||||
| T06A10.3c.1 | |||||||||
| Other_name | CELE_T06A10.3 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | gtsf-1 | ||||||||
| DB_info | Database | AceView | gene | 4R809 | |||||
| WormQTL | gene | WBGene00020286 | |||||||
| WormFlux | gene | WBGene00020286 | |||||||
| NDB | locus_tag | CELE_T06A10.3 | |||||||
| Panther | gene | CAEEL|EnsemblGenome=WBGene00020286|UniProtKB=A3QMD6 | |||||||
| family | PTHR21402 | ||||||||
| NCBI | gene | 178471 | |||||||
| RefSeq | protein | NM_070599.3 | |||||||
| NM_001313032.3 | |||||||||
| NM_001380561.1 | |||||||||
| TrEMBL | UniProtAcc | A0A0K3ARJ4 | |||||||
| A0A0K3AV29 | |||||||||
| A3QMD6 | |||||||||
| UniProt_GCRP | UniProtAcc | A3QMD6 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:02 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 07 Jun 2018 14:39:47 | WBPerson1983 | Name_change | CGC_name | gtsf-1 | ||||
| 3 | 12 Nov 2018 16:28:49 | WBPerson1983 | Name_change | CGC_name | gtsf-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | gtsf | ||||||||
| Allele (45) | |||||||||
| Strain | WBStrain00033319 | ||||||||
| WBStrain00033320 | |||||||||
| WBStrain00033318 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00000776 | ||||||||
| 00004408 | |||||||||
| Contained_in_operon | CEOP4668 | ||||||||
| CEOP4590 | |||||||||
| Ortholog (28) | |||||||||
| Structured_description | Automated_description | Predicted to enable metal ion binding activity. Located in cytoplasm. Is an ortholog of human GTSF1 (gametocyte specific factor 1). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T06A10.3a | |||||||
| T06A10.3b | |||||||||
| T06A10.3c | |||||||||
| Corresponding_transcript | T06A10.3a.1 | ||||||||
| T06A10.3b.1 | |||||||||
| T06A10.3c.1 | |||||||||
| Associated_feature | WBsf646594 | ||||||||
| WBsf981868 | |||||||||
| WBsf998934 | |||||||||
| WBsf229613 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00052609 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00052608 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr9575 | ||||||||
| Expr13773 | |||||||||
| Expr1013260 | |||||||||
| Expr1038835 | |||||||||
| Expr1156216 | |||||||||
| Expr2005916 | |||||||||
| Expr2024132 | |||||||||
| Construct_product | WBCnstr00014140 | ||||||||
| Antibody | WBAntibody00002821 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (71) | |||||||||
| SAGE_tag | SAGE:cgtcacttcc | Strand | Sense | ||||||
| Unambiguously_mapped | |||||||||
| SAGE:ttatcgaaaa | Strand | Antisense | |||||||
| SAGE:ttatcgaaaatcgatca | Strand | Antisense | |||||||
| SAGE:cgtcacttccttcccga | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:ttgtaggagc | Strand | Antisense | |||||||
| SAGE:cccttacaattcggatc | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| Interaction (14) | |||||||||
| Map_info | Map | IV | Position | 15.3793 | |||||
| Positive | Positive_clone | T06A10 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027057 | ||||||||
| WBPaper00034662 | |||||||||
| WBPaper00038444 | |||||||||
| WBPaper00040558 | |||||||||
| WBPaper00051890 | |||||||||
| WBPaper00054528 | |||||||||
| WBPaper00063514 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
