WormBase Tree Display for Gene: WBGene00020317
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WBGene00020317 | SMap | S_parent | Sequence | T07E3 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 3 | |||||
Name | CGC_name | pdf-1 | Paper_evidence | WBPaper00031656 | |||
Person_evidence | WBPerson3516 | ||||||
WBPerson3480 | |||||||
Sequence_name | T07E3.6 | ||||||
Molecular_name | T07E3.6a | ||||||
T07E3.6a.1 | |||||||
CE52388 | |||||||
T07E3.6b | |||||||
CE52158 | |||||||
T07E3.6a.2 | |||||||
T07E3.6b.1 | |||||||
Other_name | nlp-74 | ||||||
CELE_T07E3.6 | Accession_evidence | NDB | BX284603 | ||||
Public_name | pdf-1 | ||||||
DB_info | Database | AceView | gene | 3I0 | |||
WormQTL | gene | WBGene00020317 | |||||
WormFlux | gene | WBGene00020317 | |||||
NDB | locus_tag | CELE_T07E3.6 | |||||
NCBI | gene | 175963 | |||||
RefSeq | protein | NM_001392134.1 | |||||
NM_171878.7 | |||||||
SwissProt | UniProtAcc | G8JYC6 | |||||
TREEFAM | TREEFAM_ID | TF321008 | |||||
UniProt_GCRP | UniProtAcc | G8JYC6 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (3) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | |||||||
Allele (49) | |||||||
Strain | WBStrain00026308 | ||||||
WBStrain00026321 | |||||||
WBStrain00031072 | |||||||
WBStrain00055110 | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (17) | |||||||
Ortholog (21) | |||||||
Structured_description | Automated_description | Involved in several processes, including locomotory behavior; parturition; and positive regulation of protein secretion. Predicted to be located in extracellular region. Expressed in neurons and rectum. | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | T07E3.6a | |||||
T07E3.6b | |||||||
Corresponding_CDS_history | T07E3.6a:wp261 | ||||||
T07E3.6b:wp261 | |||||||
Corresponding_transcript | T07E3.6a.1 | ||||||
T07E3.6a.2 | |||||||
T07E3.6b.1 | |||||||
Other_sequence (69) | |||||||
Associated_feature | WBsf667023 | ||||||
WBsf992896 | |||||||
WBsf992897 | |||||||
WBsf992898 | |||||||
WBsf1015170 | |||||||
Experimental_info | RNAi_result | WBRNAi00035310 | Inferred_automatically | RNAi_primary | |||
WBRNAi00006788 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00052767 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr9958 | ||||||
Expr11002 | |||||||
Expr12483 | |||||||
Expr15402 | |||||||
Expr1024802 | |||||||
Expr1156375 | |||||||
Expr1200318 | |||||||
Expr2014800 | |||||||
Expr2033034 | |||||||
Drives_construct | WBCnstr00004986 | ||||||
WBCnstr00014967 | |||||||
WBCnstr00015835 | |||||||
WBCnstr00017683 | |||||||
WBCnstr00018027 | |||||||
WBCnstr00018339 | |||||||
WBCnstr00021689 | |||||||
WBCnstr00025226 | |||||||
Construct_product (11) | |||||||
Regulate_expr_cluster | WBPaper00040193:pdf-1(tm1996)_downregulated | ||||||
WBPaper00040193:pdf-1(tm1996)_upregulated | |||||||
Microarray_results (26) | |||||||
Expression_cluster (229) | |||||||
Interaction (21) | |||||||
Map_info | Map | III | Position | -0.901914 | Error | 0.002146 | |
Positive | Positive_clone | T07E3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference (32) | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |