WormBase Tree Display for Gene: WBGene00020346
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| WBGene00020346 | SMap | S_parent | Sequence | T08B2 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | rbm-5 | Person_evidence | WBPerson2495 | |||||
| Sequence_name | T08B2.5 | ||||||||
| Molecular_name (15) | |||||||||
| Other_name | CELE_T08B2.5 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | rbm-5 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:03 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 28 Sep 2016 15:57:39 | WBPerson2970 | Name_change | CGC_name | rbm-5 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rbm | ||||||||
| Allele (48) | |||||||||
| Strain | WBStrain00036733 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00083527 | ||||||||
| 00083528 | |||||||||
| 00083529 | |||||||||
| 00091474 | |||||||||
| 00091475 | |||||||||
| 00091476 | |||||||||
| 00091477 | |||||||||
| 00091478 | |||||||||
| 00124986 | |||||||||
| 00124987 | |||||||||
| Ortholog (39) | |||||||||
| Structured_description | Automated_description | Predicted to enable RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be located in nucleus. Expressed in CAN; head neurons; intestinal cell; muscle cell; and ventral nerve cord. Human ortholog(s) of this gene implicated in TARP syndrome; gastrointestinal system cancer (multiple); and lung adenocarcinoma. Is an ortholog of human RBM10 (RNA binding motif protein 10) and RBM5 (RNA binding motif protein 5). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:9256 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9896) | ||||
| DOID:3910 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9896) | ||||||
| DOID:1324 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9896) | ||||||
| DOID:0111780 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9896) | ||||||
| DOID:684 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9896) | ||||||
| Molecular_info | Corresponding_CDS | T08B2.5a | |||||||
| T08B2.5b | |||||||||
| T08B2.5d | |||||||||
| T08B2.5e | |||||||||
| Corresponding_CDS_history | T08B2.5c:wp275 | ||||||||
| T08B2.5e:wp144 | |||||||||
| T08B2.5f:wp275 | |||||||||
| T08B2.5g:wp275 | |||||||||
| Corresponding_transcript | T08B2.5a.1 | ||||||||
| T08B2.5b.1 | |||||||||
| T08B2.5d.1 | |||||||||
| T08B2.5d.2 | |||||||||
| T08B2.5e.1 | |||||||||
| T08B2.5e.2 | |||||||||
| T08B2.5e.3 | |||||||||
| Other_sequence (54) | |||||||||
| Associated_feature | WBsf643342 | ||||||||
| WBsf656371 | |||||||||
| WBsf656372 | |||||||||
| WBsf217770 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00004168 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00026234 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00004169 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00026233 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00102182 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00117091 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00035344 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00052842 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00052843 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr14251 | ||||||||
| Expr14252 | |||||||||
| Expr1020584 | |||||||||
| Expr1038863 | |||||||||
| Expr1156446 | |||||||||
| Expr2015273 | |||||||||
| Expr2033507 | |||||||||
| Drives_construct | WBCnstr00025204 | ||||||||
| WBCnstr00040682 | |||||||||
| WBCnstr00040717 | |||||||||
| Construct_product | WBCnstr00025204 | ||||||||
| WBCnstr00040683 | |||||||||
| WBCnstr00040716 | |||||||||
| WBCnstr00040717 | |||||||||
| Microarray_results (56) | |||||||||
| Expression_cluster (90) | |||||||||
| Interaction (94) | |||||||||
| Map_info | Map | I | Position | 0.881398 | |||||
| Positive | Positive_clone | T08B2 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| WBPaper00055364 | |||||||||
| WBPaper00064339 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
