WormBase Tree Display for Gene: WBGene00020451
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WBGene00020451 | SMap | S_parent | Sequence | T12B5 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | fbxa-11 | Person_evidence | WBPerson655 | |||
Sequence_name | T12B5.4 | ||||||
Molecular_name | T12B5.4 | ||||||
T12B5.4.1 | |||||||
CE20062 | |||||||
Other_name | CELE_T12B5.4 | Accession_evidence | NDB | BX284603 | |||
Public_name | fbxa-11 | ||||||
DB_info | Database | AceView | gene | 3B569 | |||
WormQTL | gene | WBGene00020451 | |||||
WormFlux | gene | WBGene00020451 | |||||
NDB | locus_tag | CELE_T12B5.4 | |||||
Panther | gene | CAEEL|WormBase=WBGene00020451|UniProtKB=Q9TZ23 | |||||
family | PTHR23015 | ||||||
NCBI | gene | 188443 | |||||
RefSeq | protein | NM_064902.2 | |||||
TREEFAM | TREEFAM_ID | TF322006 | |||||
TrEMBL | UniProtAcc | Q9TZ23 | |||||
UniProt_GCRP | UniProtAcc | Q9TZ23 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | fbxa | ||||||
Allele (146) | |||||||
RNASeq_FPKM (74) | |||||||
Ortholog (29) | |||||||
Paralog (225) | |||||||
Structured_description | Concise_description | This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction. | Paper_evidence | WBPaper00012854 | |||
Curator_confirmed | WBPerson567 | ||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||
Automated_description | Enriched in AVE; Z1.p; Z4.a; body wall muscle cell; and male distal tip cell based on tiling array and RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray and RNA-seq studies. Is affected by Cry5B and bortezomib based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: F-box domain; Domain of unknown function DUF38/FTH, Caenorhabditis species; FTH domain; and F-box A protein FB224. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | T12B5.4 | |||||
Corresponding_transcript | T12B5.4.1 | ||||||
Associated_feature | WBsf644935 | ||||||
WBsf224419 | |||||||
WBsf224420 | |||||||
Experimental_info | RNAi_result | WBRNAi00007118 | Inferred_automatically | RNAi_primary | |||
WBRNAi00053188 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00053186 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00007149 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00006598 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00018632 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00035505 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00053185 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1026133 | ||||||
Expr1156780 | |||||||
Expr2011464 | |||||||
Expr2029702 | |||||||
Drives_construct | WBCnstr00025129 | ||||||
Construct_product | WBCnstr00025129 | ||||||
Microarray_results (17) | |||||||
Expression_cluster (123) | |||||||
Interaction | WBInteraction000030756 | ||||||
WBInteraction000291995 | |||||||
Map_info | Map | III | Position | -24.9766 | Error | 0.011611 | |
Positive | Positive_clone | T12B5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00012854 | ||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |