WormBase Tree Display for Gene: WBGene00020586
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WBGene00020586 | SMap | S_parent | Sequence | T19F4 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | frpr-18 | Person_evidence | WBPerson260 | |||||
Sequence_name | T19F4.1 | ||||||||
Molecular_name | T19F4.1a | ||||||||
T19F4.1a.1 | |||||||||
CE28679 | |||||||||
T19F4.1b | |||||||||
CE29349 | |||||||||
T19F4.1c | |||||||||
CE52203 | |||||||||
T19F4.1b.1 | |||||||||
T19F4.1c.1 | |||||||||
Other_name | CELE_T19F4.1 | Accession_evidence | NDB | BX284605 | |||||
Public_name | frpr-18 | ||||||||
DB_info | Database | AceView | gene | 5H353 | |||||
WormQTL | gene | WBGene00020586 | |||||||
WormFlux | gene | WBGene00020586 | |||||||
NDB | locus_tag | CELE_T19F4.1 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00020586|UniProtKB=G5EEB1 | |||||||
family | PTHR47323 | ||||||||
NCBI | gene | 179076 | |||||||
RefSeq | protein | NM_001356672.4 | |||||||
NM_072345.7 | |||||||||
NM_001356671.3 | |||||||||
SwissProt | UniProtAcc | G5EEB1 | |||||||
TREEFAM | TREEFAM_ID | TF316702 | |||||||
UniProt_GCRP | UniProtAcc | G5EEB1 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:31:03 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 20 Dec 2011 16:46:04 | WBPerson2970 | Name_change | CGC_name | frpr-18 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | frpr | ||||||||
Allele (49) | |||||||||
Strain | WBStrain00032724 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (18) | |||||||||
Ortholog (29) | |||||||||
Paralog (187) | |||||||||
Structured_description | Concise_description | frpr-18 encodes, by alternative splicing, two G-protein coupled receptors for the flp-2-encoded peptides SPREPIRFamide (FLP2-A) and LRGEPIRFamide (FLP2-B); T19F4.1B protein has an extension of 30 residues more than T19F4.1A in the intracellular C-terminal region; T19F4.1A/B are probably linked to the G(q) pathway. | Paper_evidence | WBPaper00025071 | |||||
WBPaper00044852 | |||||||||
Person_evidence | WBPerson197 | ||||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson567 | |||||||||
Date_last_updated | 10 Feb 2016 00:00:00 | ||||||||
Automated_description | Enables G protein-coupled receptor activity. Involved in G protein-coupled receptor signaling pathway; positive regulation of protein secretion; and sleep. Located in plasma membrane. Expressed in enteric muscle and neurons. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | T19F4.1a | |||||||
T19F4.1b | |||||||||
T19F4.1c | |||||||||
Corresponding_CDS_history | T19F4.1a:wp261 | ||||||||
Corresponding_transcript | T19F4.1a.1 | ||||||||
T19F4.1b.1 | |||||||||
T19F4.1c.1 | |||||||||
Other_sequence | PPC17509_1 | ||||||||
JI174236.1 | |||||||||
Oden_isotig19659 | |||||||||
Dviv_isotig11885 | |||||||||
Acan_isotig11359 | |||||||||
Dviv_isotig22130 | |||||||||
Dviv_isotig11883 | |||||||||
Dviv_isotig11884 | |||||||||
Dviv_isotig11882 | |||||||||
Associated_feature | WBsf1000377 | ||||||||
WBsf1000378 | |||||||||
WBsf1000379 | |||||||||
WBsf1000380 | |||||||||
WBsf1000381 | |||||||||
WBsf1000382 | |||||||||
WBsf1019868 | |||||||||
WBsf1019869 | |||||||||
WBsf1019870 | |||||||||
WBsf231921 | |||||||||
Experimental_info | RNAi_result | WBRNAi00072225 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00053558 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00018862 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00000682 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00113670 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00103535 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr13088 | ||||||||
Expr1011653 | |||||||||
Expr1157121 | |||||||||
Expr2011900 | |||||||||
Expr2030137 | |||||||||
Drives_construct | WBCnstr00025028 | ||||||||
WBCnstr00038585 | |||||||||
Construct_product | WBCnstr00025028 | ||||||||
Microarray_results (24) | |||||||||
Expression_cluster (111) | |||||||||
Interaction | WBInteraction000356676 | ||||||||
WBInteraction000559828 | |||||||||
WBInteraction000559833 | |||||||||
WBInteraction000563597 | |||||||||
Map_info | Map | V | Position | 0.389315 | |||||
Positive | Positive_clone | T19F4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00025071 | ||||||||
WBPaper00032078 | |||||||||
WBPaper00044852 | |||||||||
WBPaper00050063 | |||||||||
WBPaper00055865 | |||||||||
WBPaper00065376 | |||||||||
WBPaper00065946 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |