WormBase Tree Display for Gene: WBGene00020683
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WBGene00020683 | SMap | S_parent | Sequence | T22D1 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | ribo-1 | Person_evidence | WBPerson610 | |||||
Sequence_name | T22D1.4 | ||||||||
Molecular_name | T22D1.4 | ||||||||
T22D1.4.1 | |||||||||
CE33704 | |||||||||
Other_name | CELE_T22D1.4 | Accession_evidence | NDB | BX284604 | |||||
Public_name | ribo-1 | ||||||||
DB_info | Database | AceView | gene | 4H677 | |||||
WormQTL | gene | WBGene00020683 | |||||||
WormFlux | gene | WBGene00020683 | |||||||
NDB | locus_tag | CELE_T22D1.4 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00020683|UniProtKB=Q9GZH4 | |||||||
family | PTHR21049 | ||||||||
NCBI | gene | 177456 | |||||||
RefSeq | protein | NM_068664.7 | |||||||
SwissProt | UniProtAcc | Q9GZH4 | |||||||
TREEFAM | TREEFAM_ID | TF312988 | |||||||
UniProt_GCRP | UniProtAcc | Q9GZH4 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:31:03 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 24 Feb 2012 10:16:23 | WBPerson2970 | Name_change | CGC_name | ribo-1 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | ribo | ||||||||
Allele (24) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00093151 | ||||||||
00093152 | |||||||||
00093153 | |||||||||
00093154 | |||||||||
00093155 | |||||||||
00093156 | |||||||||
00093157 | |||||||||
00125254 | |||||||||
00125255 | |||||||||
Contained_in_operon | CEOP4204 | ||||||||
Ortholog (37) | |||||||||
Paralog | WBGene00004402 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
WBGene00004403 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Structured_description | Automated_description | Predicted to be involved in protein N-linked glycosylation via asparagine. Predicted to be located in endoplasmic reticulum membrane. Predicted to be part of oligosaccharyltransferase complex. Is an ortholog of human RPN1 (ribophorin I). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | T22D1.4 | |||||||
Corresponding_CDS_history | T22D1.4:wp97 | ||||||||
Corresponding_transcript | T22D1.4.1 | ||||||||
Other_sequence (72) | |||||||||
Associated_feature | WBsf655011 | ||||||||
WBsf660250 | |||||||||
WBsf660251 | |||||||||
WBsf660252 | |||||||||
WBsf660253 | |||||||||
WBsf228479 | |||||||||
WBsf228480 | |||||||||
WBsf228481 | |||||||||
Experimental_info | RNAi_result (15) | ||||||||
Expr_pattern | Expr1017985 | ||||||||
Expr1039008 | |||||||||
Expr1157377 | |||||||||
Expr2015344 | |||||||||
Expr2033578 | |||||||||
Drives_construct | WBCnstr00024964 | ||||||||
Construct_product | WBCnstr00024964 | ||||||||
Microarray_results (19) | |||||||||
Expression_cluster (114) | |||||||||
Interaction (98) | |||||||||
Map_info | Map | IV | Position | 3.25 | |||||
Positive | Positive_clone | T22D1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00026630 | ||||||||
WBPaper00029024 | |||||||||
WBPaper00038491 | |||||||||
WBPaper00041771 | |||||||||
WBPaper00042421 | |||||||||
WBPaper00050793 | |||||||||
WBPaper00055090 | |||||||||
WBPaper00055674 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |