WormBase Tree Display for Gene: WBGene00020689
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WBGene00020689 | SMap | S_parent | Sequence | CHROMOSOME_IV | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 3 | |||||||
Name | CGC_name | npr-12 | Paper_evidence | WBPaper00033064 | |||||
Person_evidence | WBPerson42 | ||||||||
WBPerson11490 | |||||||||
Sequence_name | T22D1.12 | ||||||||
Molecular_name | T22D1.12a | ||||||||
T22D1.12a.1 | |||||||||
CE17256 | |||||||||
T22D1.12b | |||||||||
CE49348 | |||||||||
T22D1.12b.1 | |||||||||
Other_name | npfr-2 | Person_evidence | WBPerson11490 | ||||||
CELE_T22D1.12 | Accession_evidence | NDB | BX284604 | ||||||
Public_name | npr-12 | ||||||||
DB_info | Database | AceView | gene | 4H694 | |||||
WormQTL | gene | WBGene00020689 | |||||||
WormFlux | gene | WBGene00020689 | |||||||
NDB | locus_tag | CELE_T22D1.12 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00020689|UniProtKB=V6CLI1 | |||||||
family | PTHR24235 | ||||||||
NCBI | gene | 188742 | |||||||
RefSeq | protein | NM_068670.2 | |||||||
NM_001306803.3 | |||||||||
TrEMBL | UniProtAcc | Q9GZG8 | |||||||
V6CLI1 | |||||||||
UniProt_GCRP | UniProtAcc | V6CLI1 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:31:03 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 08 May 2009 14:29:51 | WBPerson9133 | Name_change | CGC_name | npr-12 | ||||
3 | 13 Oct 2023 01:37:05 | WBPerson51134 | Name_change | CGC_name | npr-12 | ||||
Other_name | npfr-2 | ||||||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | npr | ||||||||
Allele (94) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00093099 | ||||||||
00093100 | |||||||||
00093101 | |||||||||
00093102 | |||||||||
00093103 | |||||||||
00093104 | |||||||||
00125259 | |||||||||
00125260 | |||||||||
00125261 | |||||||||
00125262 | |||||||||
Ortholog (36) | |||||||||
Paralog | WBGene00003807 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
WBGene00003808 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
WBGene00016110 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00016984 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00021983 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
Structured_description | Automated_description | Predicted to enable neuropeptide Y receptor activity. Predicted to be involved in neuropeptide signaling pathway. Predicted to be located in membrane. Expressed in FLPL; FLPR; PVDL; and PVDR. Human ortholog(s) of this gene implicated in peripheral artery disease and temporal lobe epilepsy. Is an ortholog of human NPY1R (neuropeptide Y receptor Y1); NPY4R (neuropeptide Y receptor Y4); and NPY4R2 (neuropeptide Y receptor Y4-2). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Disease_info | Potential_model | DOID:3328 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:7956) | ||||
DOID:0050830 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:7956) | ||||||
Molecular_info | Corresponding_CDS | T22D1.12a | |||||||
T22D1.12b | |||||||||
Corresponding_transcript | T22D1.12a.1 | ||||||||
T22D1.12b.1 | |||||||||
Other_sequence | CJC02290_1 | ||||||||
Dviv_isotig23890 | |||||||||
BXC04084_1 | |||||||||
JI181608.1 | |||||||||
HBC00450_1 | |||||||||
JI220695.1 | |||||||||
Associated_feature | WBsf996851 | ||||||||
WBsf1017633 | |||||||||
WBsf230200 | |||||||||
WBsf230201 | |||||||||
Experimental_info | RNAi_result | WBRNAi00053825 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00035808 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00072227 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr13698 | ||||||||
Expr1019143 | |||||||||
Expr1157372 | |||||||||
Expr2014397 | |||||||||
Expr2032638 | |||||||||
Drives_construct | WBCnstr00039945 | ||||||||
WBCnstr00039946 | |||||||||
Construct_product | WBCnstr00039946 | ||||||||
Microarray_results (18) | |||||||||
Expression_cluster (117) | |||||||||
Interaction | WBInteraction000030016 | ||||||||
WBInteraction000031505 | |||||||||
WBInteraction000032310 | |||||||||
WBInteraction000032412 | |||||||||
WBInteraction000384550 | |||||||||
WBInteraction000392181 | |||||||||
WBInteraction000408358 | |||||||||
WBInteraction000505772 | |||||||||
WBInteraction000505774 | |||||||||
WBInteraction000511495 | |||||||||
Map_info | Map | IV | Position | 3.25034 | Error | 0.000379 | |||
Positive | Positive_clone | T22D1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference (11) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |