WormBase Tree Display for Gene: WBGene00020706

WBGene00020706 SMap: S_parent: Sequence: T22H9
  Identity: Version: 3
    Name: CGC_name: atg-9 Person_evidence: WBPerson649
      Sequence_name: T22H9.2
      Molecular_name: T22H9.2a
        T22H9.2a.1
        CE50377
        T22H9.2b
        CE50705
        T22H9.2b.1
      Other_name: atgr-9 Person_evidence: WBPerson649
        CELE_T22H9.2 Accession_evidence: NDB BX284605
      Public_name: atg-9
    DB_info: Database: AceView gene 5A837
        WormQTL gene WBGene00020706
        WormFlux gene WBGene00020706
        NDB locus_tag CELE_T22H9.2
        Panther gene CAEEL|EnsemblGenome=WBGene00020706|UniProtKB=Q9TXN6
          family PTHR13038
        NCBI gene 178561
        RefSeq protein NM_001377584.1
            NM_070777.5
        TREEFAM TREEFAM_ID TF313665
        TrEMBL UniProtAcc Q9TXN6
            H2L0M4
        UniProt_GCRP UniProtAcc Q9TXN6
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:03 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 27 Apr 2006 11:26:11 WBPerson2970 Name_change: CGC_name: atgr-9
        3 29 Feb 2008 11:29:00 WBPerson2970 Name_change: CGC_name: atg-9
                Other_name: atgr-9
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: atg
    Allele (170)
    Possibly_affected_by: WBVar02157270
    Strain: WBStrain00008600
      WBStrain00005625
      WBStrain00054696
    RNASeq_FPKM (74)
    GO_annotation (17)
    Contained_in_operon: CEOP5016
    Ortholog (41)
    Structured_description: Automated_description: Involved in regulation of presynapse assembly. Located in cytoplasm and presynapse. Expressed in several structures, including AIY; hypodermis; nerve ring; neuronal sheath cell; and spermatheca. Is an ortholog of human ATG9A (autophagy related 9A). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T22H9.2a
      T22H9.2b
    Corresponding_CDS_history: T22H9.2a:wp246
      T22H9.2b:wp246
    Corresponding_transcript: T22H9.2a.1
      T22H9.2b.1
    Other_sequence (26)
    Associated_feature: WBsf661044
      WBsf661095
      WBsf999140
      WBsf1019061
      WBsf231316
  Experimental_info: RNAi_result: WBRNAi00092337 Inferred_automatically: RNAi_primary
      WBRNAi00092338 Inferred_automatically: RNAi_primary
      WBRNAi00053878 Inferred_automatically: RNAi_primary
      WBRNAi00099131 Inferred_automatically: RNAi_primary
      WBRNAi00111154 Inferred_automatically: RNAi_primary
      WBRNAi00086924 Inferred_automatically: RNAi_primary
      WBRNAi00019051 Inferred_automatically: RNAi_primary
      WBRNAi00080482 Inferred_automatically: RNAi_primary
      WBRNAi00065172 Inferred_automatically: RNAi_primary
      WBRNAi00076700 Inferred_automatically: RNAi_primary
    Expr_pattern (11)
    Drives_construct: WBCnstr00038078
      WBCnstr00042755
    Construct_product: WBCnstr00008912
      WBCnstr00038078
      WBCnstr00042755
    Microarray_results (27)
    Expression_cluster (121)
    Interaction (11)
  Map_info: Map: V Position: -20.002
    Positive: Positive_clone: T22H9 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference (29)
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene