WormBase Tree Display for Gene: WBGene00020762
expand all nodes | collapse all nodes | view schema
| WBGene00020762 | SMap | S_parent | Sequence | T24C4 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | zer-1 | Person_evidence | WBPerson322 | |||||
| Sequence_name | T24C4.6 | ||||||||
| Molecular_name | T24C4.6a | ||||||||
| T24C4.6a.1 | |||||||||
| CE39414 | |||||||||
| T24C4.6b | |||||||||
| CE39415 | |||||||||
| T24C4.6a.2 | |||||||||
| T24C4.6b.1 | |||||||||
| Other_name | CELE_T24C4.6 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | zer-1 | ||||||||
| DB_info | Database | AceView | gene | 3B500 | |||||
| WormQTL | gene | WBGene00020762 | |||||||
| WormFlux | gene | WBGene00020762 | |||||||
| NDB | locus_tag | CELE_T24C4.6 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00020762|UniProtKB=Q2WF59 | |||||||
| family | PTHR12904 | ||||||||
| NCBI | gene | 175249 | |||||||
| RefSeq | protein | NM_171078.7 | |||||||
| NM_171079.10 | |||||||||
| SwissProt | UniProtAcc | Q2WF59 | |||||||
| TREEFAM | TREEFAM_ID | TF313007 | |||||||
| UniProt_GCRP | UniProtAcc | Q2WF59 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:03 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 19 May 2006 11:42:44 | WBPerson2970 | Name_change | CGC_name | zer-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | zer | ||||||||
| Allele (131) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00080477 | ||||||||
| 00080478 | |||||||||
| 00080479 | |||||||||
| 00080480 | |||||||||
| 00080481 | |||||||||
| 00080482 | |||||||||
| Ortholog (37) | |||||||||
| Paralog (22) | |||||||||
| Structured_description | Concise_description | zer-1 encodes a protein that contains a VHL (von Hippel-Lindau)-box motif and is a member of the ZYG11 family of ubiquitin ligase substrate recognition subunits; ZER-1 interacts with the CUL-2 cullin in vivo and modestly enhances the lethality produced by a temperature-sensitive allele of zyg-11; in yeast two-hybrid assays, ZER-1 interacts with CUL-2 and additionally with SKR-1 and ELC-1. | Paper_evidence | WBPaper00029122 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 14 Jan 2008 00:00:00 | ||||||||
| Automated_description | Part of Cul2-RING ubiquitin ligase complex. Is an ortholog of human ZER1 (zyg-11 related cell cycle regulator). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T24C4.6a | |||||||
| T24C4.6b | |||||||||
| Corresponding_CDS_history | T24C4.6a:wp130 | ||||||||
| T24C4.6a:wp151 | |||||||||
| T24C4.6b:wp151 | |||||||||
| Corresponding_transcript | T24C4.6a.1 | ||||||||
| T24C4.6a.2 | |||||||||
| T24C4.6b.1 | |||||||||
| Other_sequence (23) | |||||||||
| Associated_feature | WBsf650824 | ||||||||
| WBsf650825 | |||||||||
| WBsf655417 | |||||||||
| WBsf666544 | |||||||||
| WBsf666545 | |||||||||
| WBsf226144 | |||||||||
| WBsf226145 | |||||||||
| WBsf226146 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00019148 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00103542 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00006603 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00054042 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1020073 | ||||||||
| Expr1039040 | |||||||||
| Expr1157582 | |||||||||
| Expr2018126 | |||||||||
| Expr2036263 | |||||||||
| Drives_construct | WBCnstr00024905 | ||||||||
| Construct_product | WBCnstr00024905 | ||||||||
| Microarray_results (27) | |||||||||
| Expression_cluster (97) | |||||||||
| Interaction (107) | |||||||||
| Map_info | Map | III | Position | -25.461 | Error | 0.026664 | |||
| Positive | Positive_clone | T24C4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00029122 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00043294 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
