WormBase Tree Display for Gene: WBGene00020852
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| WBGene00020852 | SMap | S_parent | Sequence | T27B7 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | nhr-228 | Person_evidence | WBPerson600 | |||||
| Sequence_name | T27B7.6 | ||||||||
| Molecular_name | T27B7.6a | ||||||||
| T27B7.6a.1 | |||||||||
| CE35786 | |||||||||
| T27B7.6b | |||||||||
| CE39785 | |||||||||
| T27B7.6b.1 | |||||||||
| T27B7.6c | |||||||||
| T27B7.6d | |||||||||
| Other_name | CELE_T27B7.6 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | nhr-228 | ||||||||
| DB_info | Database | WormQTL | gene | WBGene00020852 | |||||
| WormFlux | gene | WBGene00020852 | |||||||
| NDB | locus_tag | CELE_T27B7.6 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00020852|UniProtKB=H2L0M9 | |||||||
| family | PTHR45680 | ||||||||
| NCBI | gene | 188977 | |||||||
| RefSeq | protein | NM_001047708.3 | |||||||
| NR_133582.1 | |||||||||
| NR_133581.1 | |||||||||
| NM_001047707.6 | |||||||||
| TREEFAM | TREEFAM_ID | TF315604 | |||||||
| TrEMBL | UniProtAcc | H2L0M9 | |||||||
| B7E2K1 | |||||||||
| UniProt_GCRP | UniProtAcc | H2L0M9 | |||||||
| RNAcentral | URSid | URS00008DA900 | |||||||
| URS00008DAB2E | |||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:03 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 22 Jul 2005 10:29:12 | WBPerson2970 | Name_change | CGC_name | nhr-228 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nhr | ||||||||
| Allele (80) | |||||||||
| Strain | WBStrain00036485 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00006409 | ||||||||
| 00023207 | |||||||||
| 00023208 | |||||||||
| 00023209 | |||||||||
| 00125399 | |||||||||
| 00125400 | |||||||||
| 00125401 | |||||||||
| 00125402 | |||||||||
| Ortholog (32) | |||||||||
| Paralog (218) | |||||||||
| Structured_description | Automated_description | Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. Expressed in head neurons; intestine; pharynx; and tail neurons. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T27B7.6a | |||||||
| T27B7.6b | |||||||||
| Corresponding_CDS_history | T27B7.6:wp109 | ||||||||
| T27B7.6:wp154 | |||||||||
| Corresponding_transcript | T27B7.6c | ||||||||
| T27B7.6d | |||||||||
| T27B7.6a.1 | |||||||||
| T27B7.6b.1 | |||||||||
| Other_sequence | CBC11885_1 | ||||||||
| MC01373 | |||||||||
| MCC00140_1 | |||||||||
| Associated_feature | WBsf646703 | ||||||||
| WBsf646704 | |||||||||
| WBsf978682 | |||||||||
| WBsf999490 | |||||||||
| WBsf231497 | |||||||||
| Transcription_factor | WBTranscriptionFactor001074 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00054278 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00036022 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00054279 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr7689 | ||||||||
| Expr1021881 | |||||||||
| Expr1039089 | |||||||||
| Expr1157828 | |||||||||
| Expr2014129 | |||||||||
| Expr2032368 | |||||||||
| Drives_construct | WBCnstr00012834 | ||||||||
| WBCnstr00024837 | |||||||||
| Construct_product | WBCnstr00024837 | ||||||||
| Microarray_results (23) | |||||||||
| Expression_cluster (102) | |||||||||
| Interaction | WBInteraction000359864 | ||||||||
| WBInteraction000422691 | |||||||||
| Map_info | Map | V | Position | -15.0003 | Error | 0.00502 | |||
| Positive | Positive_clone | T27B7 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
