WormBase Tree Display for Gene: WBGene00020961
expand all nodes | collapse all nodes | view schema
| WBGene00020961 | SMap | S_parent | Sequence | W02H5 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | sknr-1 | Person_evidence | WBPerson1787 | |||||
| Sequence_name | W02H5.7 | ||||||||
| Molecular_name | W02H5.7a | ||||||||
| W02H5.7a.1 | |||||||||
| CE51056 | |||||||||
| W02H5.7b | |||||||||
| CE51152 | |||||||||
| W02H5.7b.1 | |||||||||
| Other_name | W02H5.b | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| W02H5.e | Curator_confirmed | WBPerson1983 | |||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_W02H5.7 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | sknr-1 | ||||||||
| DB_info | Database | AceView | gene | 5D98 | |||||
| WormQTL | gene | WBGene00020961 | |||||||
| WormFlux | gene | WBGene00020961 | |||||||
| NDB | locus_tag | CELE_W02H5.7 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00020961|UniProtKB=A0A0M7REQ4 | |||||||
| family | PTHR24411 | ||||||||
| NCBI | gene | 189139 | |||||||
| RefSeq | protein | NM_001316826.3 | |||||||
| NM_001316827.3 | |||||||||
| TrEMBL | UniProtAcc | A0A0M7REQ4 | |||||||
| A0A0M7RDV9 | |||||||||
| UniProt_GCRP | UniProtAcc | A0A0M7REQ4 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:03 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 01 Apr 2005 11:05:24 | WBPerson2970 | Name_change | CGC_name | sknr-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | sknr | ||||||||
| Allele (61) | |||||||||
| Strain | WBStrain00031875 | ||||||||
| WBStrain00055629 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (13) | |||||||||
| Ortholog (39) | |||||||||
| Paralog | WBGene00004804 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | |||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Human ortholog(s) of this gene implicated in several diseases, including Alzheimer's disease; liver disease (multiple); obesity; and pulmonary emphysema. Is an ortholog of several human genes including NFE2 (nuclear factor, erythroid 2); NFE2L1 (NFE2 like bZIP transcription factor 1); and NFE2L2 (NFE2 like bZIP transcription factor 2). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model (11) | ||||||||
| Molecular_info | Corresponding_CDS | W02H5.7a | |||||||
| W02H5.7b | |||||||||
| Corresponding_CDS_history | W02H5.7:wp250 | ||||||||
| Corresponding_transcript | W02H5.7a.1 | ||||||||
| W02H5.7b.1 | |||||||||
| Other_sequence (22) | |||||||||
| Associated_feature | WBsf668601 | ||||||||
| WBsf668797 | |||||||||
| WBsf978630 | |||||||||
| Transcription_factor | WBTranscriptionFactor000526 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00103559 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00026464 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00019520 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00094018 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00054635 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00094420 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00094304 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr6828 | ||||||||
| Expr7695 | |||||||||
| Expr1016542 | |||||||||
| Expr1158184 | |||||||||
| Expr2015832 | |||||||||
| Expr2034065 | |||||||||
| Drives_construct | WBCnstr00004046 | ||||||||
| WBCnstr00012840 | |||||||||
| WBCnstr00024759 | |||||||||
| Construct_product | WBCnstr00024759 | ||||||||
| WBCnstr00038852 | |||||||||
| Microarray_results (16) | |||||||||
| Expression_cluster (49) | |||||||||
| Interaction (13) | |||||||||
| Map_info | Map | V | Position | -13.4234 | Error | 0.03417 | |||
| Positive | Positive_clone | W02H5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5143 | |||||||
| 4922 | |||||||||
| 5604 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027309 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00044096 | |||||||||
| WBPaper00051677 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
