WormBase Tree Display for Gene: WBGene00021042
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| WBGene00021042 | SMap | S_parent | Sequence | W05G11 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | btb-5 | Person_evidence | WBPerson261 | |||||
| Sequence_name | W05G11.5 | ||||||||
| Molecular_name | W05G11.5 | ||||||||
| W05G11.5.1 | |||||||||
| CE51677 | |||||||||
| Other_name | CELE_W05G11.5 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | btb-5 | ||||||||
| DB_info | Database | AceView | gene | 3A676 | |||||
| WormQTL | gene | WBGene00021042 | |||||||
| WormFlux | gene | WBGene00021042 | |||||||
| NDB | locus_tag | CELE_W05G11.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00021042|UniProtKB=O44905 | |||||||
| family | PTHR22744 | ||||||||
| NCBI | gene | 189221 | |||||||
| RefSeq | protein | NM_001330882.3 | |||||||
| TREEFAM | TREEFAM_ID | TF322195 | |||||||
| TrEMBL | UniProtAcc | O44905 | |||||||
| UniProt_GCRP | UniProtAcc | O44905 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:04 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 07 Nov 2007 11:51:23 | WBPerson2970 | Name_change | CGC_name | btb-5 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | btb | ||||||||
| Allele (69) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (18) | |||||||||
| Paralog (29) | |||||||||
| Structured_description | Automated_description | Enriched in AVK; GABAergic neurons; and rect_D based on tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-2; eat-2; and pgl-1 based on RNA-seq and microarray studies. Is affected by four chemicals including Rifampin; allantoin; and Sirolimus based on RNA-seq studies. Is predicted to encode a protein with the following domains: SKP1/BTB/POZ domain superfamily and BTB/POZ domain. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | W05G11.5 | |||||||
| Corresponding_CDS_history | W05G11.5:wp253 | ||||||||
| Corresponding_transcript | W05G11.5.1 | ||||||||
| Other_sequence | CRC03093_1 | ||||||||
| CR08416 | |||||||||
| CRC08271_1 | |||||||||
| CR05832 | |||||||||
| CR05513 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00019626 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00006614 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00054836 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1012065 | ||||||||
| Expr1158378 | |||||||||
| Expr2009673 | |||||||||
| Expr2027912 | |||||||||
| Microarray_results | SMD_W05G11.5 | ||||||||
| 185971_at | |||||||||
| Aff_W05G11.5 | |||||||||
| GPL19516_CGZ0038484 | |||||||||
| GPL21109_W05G11.5 | |||||||||
| GPL8673_W05G11_5P00012 | |||||||||
| Expression_cluster (42) | |||||||||
| Interaction (44) | |||||||||
| Map_info | Map | III | Position | -27.1584 | Error | 0.026564 | |||
| Positive | Positive_clone | W05G11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
