WormBase Tree Display for Gene: WBGene00021346
expand all nodes | collapse all nodes | view schema
| WBGene00021346 | SMap | S_parent | Sequence | Y37E3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | Y37E3.1 | |||||||
| Molecular_name | Y37E3.1 | ||||||||
| Y37E3.1.1 | |||||||||
| CE26836 | |||||||||
| Other_name | CELE_Y37E3.1 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | Y37E3.1 | ||||||||
| DB_info | Database | AceView | gene | 1C630 | |||||
| WormQTL | gene | WBGene00021346 | |||||||
| WormFlux | gene | WBGene00021346 | |||||||
| NDB | locus_tag | CELE_Y37E3.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00021346|UniProtKB=Q9BKU9 | |||||||
| family | PTHR26312 | ||||||||
| NCBI | gene | 171762 | |||||||
| RefSeq | protein | NM_058521.6 | |||||||
| TREEFAM | TREEFAM_ID | TF316804 | |||||||
| TrEMBL | UniProtAcc | Q9BKU9 | |||||||
| UniProt_GCRP | UniProtAcc | Q9BKU9 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:04 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (37) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (25) | |||||||||
| Structured_description | Automated_description | Enriched in several structures, including ABalpppappp; ABalpppppa; ABalppppppp; ciliated neurons; and germ line based on RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including hsf-1; hpl-2; and dpy-9 based on tiling array; RNA-seq; and microarray studies. Is affected by five chemicals including rotenone; paraquat; and Atrazine based on RNA-seq and microarray studies. Human TTC5 enables ribosome binding activity. Is predicted to encode a protein with the following domains: Tetratricopeptide repeat; Tetratricopeptide repeat protein 5 OB fold domain; Tetratricopeptide repeat protein 5, OB fold domain; Tetratricopeptide-like helical domain superfamily; and TTC5, OB fold domain superfamily. Is an ortholog of human TTC5 (tetratricopeptide repeat domain 5). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y37E3.1 | |||||||
| Corresponding_transcript | Y37E3.1.1 | ||||||||
| Other_sequence | CR08688 | ||||||||
| CBC06326_1 | |||||||||
| CRC08730_1 | |||||||||
| JI470828.1 | |||||||||
| CR08689 | |||||||||
| Associated_feature | WBsf648954 | ||||||||
| WBsf982796 | |||||||||
| WBsf982797 | |||||||||
| WBsf982798 | |||||||||
| WBsf982799 | |||||||||
| WBsf982800 | |||||||||
| WBsf1009285 | |||||||||
| WBsf1009286 | |||||||||
| WBsf1009287 | |||||||||
| WBsf219005 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00116519 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00055926 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1018937 | ||||||||
| Expr1039314 | |||||||||
| Expr1159446 | |||||||||
| Expr2007266 | |||||||||
| Expr2025499 | |||||||||
| Microarray_results (16) | |||||||||
| Expression_cluster (71) | |||||||||
| Interaction | WBInteraction000242090 | ||||||||
| WBInteraction000390979 | |||||||||
| WBInteraction000390980 | |||||||||
| WBInteraction000464943 | |||||||||
| WBInteraction000470069 | |||||||||
| Map_info | Positive | Positive_clone | Y37E3 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | I | -12.2283 | |||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064339 | |||||||||
| Method | Gene |
