WormBase Tree Display for Gene: WBGene00021417
expand all nodes | collapse all nodes | view schema
| WBGene00021417 | SMap | S_parent | Sequence | Y38F2AL | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | nhr-236 | Person_evidence | WBPerson600 | |||||
| Sequence_name | Y38F2AL.5 | ||||||||
| Molecular_name | Y38F2AL.5 | ||||||||
| Y38F2AL.5.1 | |||||||||
| CE43721 | |||||||||
| Other_name | Y38F2AL.b | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_Y38F2AL.5 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | nhr-236 | ||||||||
| DB_info | Database | AceView | gene | 4D92 | |||||
| WormQTL | gene | WBGene00021417 | |||||||
| WormFlux | gene | WBGene00021417 | |||||||
| NDB | locus_tag | CELE_Y38F2AL.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00021417|UniProtKB=Q9N418 | |||||||
| family | PTHR24083 | ||||||||
| NCBI | gene | 189677 | |||||||
| RefSeq | protein | NM_067789.8 | |||||||
| TREEFAM | TREEFAM_ID | TF315716 | |||||||
| TrEMBL | UniProtAcc | Q9N418 | |||||||
| UniProt_GCRP | UniProtAcc | Q9N418 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:04 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 22 Jul 2005 10:29:12 | WBPerson2970 | Name_change | CGC_name | nhr-236 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nhr | ||||||||
| Allele (62) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (13) | |||||||||
| Ortholog (23) | |||||||||
| Paralog (43) | |||||||||
| Structured_description | Automated_description | Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and nuclear receptor activity. Predicted to be involved in cell differentiation and regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y38F2AL.5 | |||||||
| Corresponding_CDS_history | Y38F2AL.5:wp105 | ||||||||
| Y38F2AL.5:wp202 | |||||||||
| Corresponding_transcript | Y38F2AL.5.1 | ||||||||
| Other_sequence | ASC05971_1 | ||||||||
| JI217133.1 | |||||||||
| AS08933 | |||||||||
| HG10842 | |||||||||
| HGC01896_1 | |||||||||
| BXC00750_1 | |||||||||
| Associated_feature | WBsf651670 | ||||||||
| WBsf667774 | |||||||||
| WBsf995666 | |||||||||
| WBsf995667 | |||||||||
| WBsf995668 | |||||||||
| WBsf995669 | |||||||||
| WBsf1016888 | |||||||||
| WBsf229809 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00020298 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00056045 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00036858 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1017290 | ||||||||
| Expr1039354 | |||||||||
| Expr1159568 | |||||||||
| Expr2014135 | |||||||||
| Expr2032375 | |||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (57) | |||||||||
| Map_info | Map | IV | Position | -7.87462 | Error | 0.046199 | |||
| Positive | Positive_clone | Y38F2AL | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
