WormBase Tree Display for Gene: WBGene00021507
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| WBGene00021507 | SMap | S_parent | Sequence | CHROMOSOME_IV | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | ptpn-22 | Person_evidence | WBPerson171 | |||||
| Sequence_name | Y41D4A.5 | ||||||||
| Molecular_name | Y41D4A.5 | ||||||||
| Y41D4A.5.1 | |||||||||
| CE39047 | |||||||||
| Y41D4A.5.2 | |||||||||
| Y41D4A.5.3 | |||||||||
| Other_name | CELE_Y41D4A.5 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | ptpn-22 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:04 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 10 Sep 2020 13:22:36 | WBPerson1983 | Name_change | CGC_name | ptpn-22 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ptpn | ||||||||
| Allele (344) | |||||||||
| Strain | WBStrain00037688 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00089578 | ||||||||
| 00089579 | |||||||||
| 00125842 | |||||||||
| 00125843 | |||||||||
| Ortholog (46) | |||||||||
| Paralog (65) | |||||||||
| Structured_description | Automated_description | Predicted to enable protein tyrosine phosphatase activity. Human ortholog(s) of this gene implicated in several diseases, including Addison's disease; autoimmune disease (multiple); and graft-versus-host disease. Is an ortholog of human PTPN22 (protein tyrosine phosphatase non-receptor type 22). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model (30) | ||||||||
| Molecular_info | Corresponding_CDS | Y41D4A.5 | |||||||
| Corresponding_CDS_history | Y41D4A.5:wp147 | ||||||||
| Corresponding_transcript | Y41D4A.5.1 | ||||||||
| Y41D4A.5.2 | |||||||||
| Y41D4A.5.3 | |||||||||
| Other_sequence (18) | |||||||||
| Associated_feature | WBsf995516 | ||||||||
| WBsf995517 | |||||||||
| WBsf995518 | |||||||||
| WBsf1016778 | |||||||||
| Experimental_info | RNAi_result (22) | ||||||||
| Expr_pattern | Expr1020666 | ||||||||
| Expr1039399 | |||||||||
| Expr1159859 | |||||||||
| Expr2007438 | |||||||||
| Expr2025674 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (79) | |||||||||
| Interaction (24) | |||||||||
| Map_info | Map | IV | Position | -16.0904 | |||||
| Positive | Positive_clone | Y41D4A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00031805 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00061148 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
