WormBase Tree Display for Gene: WBGene00021667
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| WBGene00021667 | SMap | S_parent | Sequence | Y48G1BM | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | snpc-3.2 | Person_evidence | WBPerson2290 | |||||
| Sequence_name | Y48G1BM.1 | ||||||||
| Molecular_name | Y48G1BM.1 | ||||||||
| Y48G1BM.1.1 | |||||||||
| CE40284 | |||||||||
| Other_name | CELE_Y48G1BM.1 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | snpc-3.2 | ||||||||
| DB_info | Database | AceView | gene | 1A727 | |||||
| WormQTL | gene | WBGene00021667 | |||||||
| WormFlux | gene | WBGene00021667 | |||||||
| NDB | locus_tag | CELE_Y48G1BM.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00021667|UniProtKB=Q965U6 | |||||||
| family | PTHR13421 | ||||||||
| NCBI | gene | 171615 | |||||||
| RefSeq | protein | NM_058305.6 | |||||||
| TREEFAM | TREEFAM_ID | TF317705 | |||||||
| TrEMBL | UniProtAcc | Q965U6 | |||||||
| UniProt_GCRP | UniProtAcc | Q965U6 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:04 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 04 Jul 2013 14:01:25 | WBPerson2970 | Name_change | CGC_name | snpc-3.2 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | snpc | ||||||||
| Allele (36) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00090687 | ||||||||
| 00090688 | |||||||||
| 00090689 | |||||||||
| 00090690 | |||||||||
| 00090691 | |||||||||
| 00090692 | |||||||||
| 00090693 | |||||||||
| 00090694 | |||||||||
| 00090695 | |||||||||
| 00090696 | |||||||||
| Ortholog (35) | |||||||||
| Paralog | WBGene00011367 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00015098 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00021662 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WBGene00255594 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to enable RNA polymerase III type 3 promoter sequence-specific DNA binding activity and bent DNA binding activity. Predicted to contribute to RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and core promoter sequence-specific DNA binding activity. Predicted to be involved in snRNA transcription by RNA polymerase II and snRNA transcription by RNA polymerase III. Predicted to be located in nucleus. Predicted to be part of snRNA-activating protein complex. Is an ortholog of human SNAPC3 (small nuclear RNA activating complex polypeptide 3). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y48G1BM.1 | |||||||
| Corresponding_CDS_history | Y48G1BM.1:wp159 | ||||||||
| Corresponding_transcript | Y48G1BM.1.1 | ||||||||
| Other_sequence | CRC12144_1 | ||||||||
| CR08344 | |||||||||
| Associated_feature | WBsf982443 | ||||||||
| WBsf982444 | |||||||||
| WBsf982445 | |||||||||
| WBsf982446 | |||||||||
| WBsf1009055 | |||||||||
| WBsf217114 | |||||||||
| WBsf217115 | |||||||||
| Experimental_info | RNAi_result (16) | ||||||||
| Expr_pattern | Expr1039487 | ||||||||
| Expr1160391 | |||||||||
| Expr2015960 | |||||||||
| Expr2034195 | |||||||||
| Drives_construct | WBCnstr00024461 | ||||||||
| Construct_product | WBCnstr00024461 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (75) | |||||||||
| Interaction | WBInteraction000560010 | ||||||||
| WBInteraction000571494 | |||||||||
| WBInteraction000571502 | |||||||||
| Map_info | Map | I | Position | -19.1154 | |||||
| Positive | Positive_clone | Y48G1BM | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
