WormBase Tree Display for Gene: WBGene00021685
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| WBGene00021685 | SMap | S_parent | Sequence | Y48G8AL | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | herc-1 | Person_evidence | WBPerson242 | |||||
| Sequence_name | Y48G8AL.1 | ||||||||
| Molecular_name (16) | |||||||||
| Other_name | hpo-23 | Paper_evidence | WBPaper00038231 | ||||||
| Person_evidence | WBPerson26 | ||||||||
| CELE_Y48G8AL.1 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | herc-1 | ||||||||
| DB_info | Database | AceView | gene | 1B727 | |||||
| WormQTL | gene | WBGene00021685 | |||||||
| WormFlux | gene | WBGene00021685 | |||||||
| NDB | locus_tag | CELE_Y48G8AL.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00021685|UniProtKB=Q9BL11 | |||||||
| family | PTHR45622 | ||||||||
| NCBI | gene | 171700 | |||||||
| RefSeq | protein | NM_001306504.3 | |||||||
| NM_058433.6 | |||||||||
| NM_001306505.3 | |||||||||
| NM_001306503.3 | |||||||||
| NM_001306506.3 | |||||||||
| TrEMBL | UniProtAcc | W6RS03 | |||||||
| Q9BL11 | |||||||||
| W6SBJ0 | |||||||||
| W6RTM2 | |||||||||
| W6RY72 | |||||||||
| UniProt_GCRP | UniProtAcc | Q9BL11 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:04 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 26 Apr 2011 13:31:47 | WBPerson2970 | Name_change | CGC_name | hpo-23 | ||||
| 3 | 29 Jul 2011 16:12:37 | WBPerson2970 | Name_change | CGC_name | herc-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | herc | ||||||||
| Allele (1391) | |||||||||
| Strain | WBStrain00036294 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00091760 | ||||||||
| 00091761 | |||||||||
| 00091762 | |||||||||
| 00091763 | |||||||||
| 00091764 | |||||||||
| 00125944 | |||||||||
| 00125945 | |||||||||
| 00125946 | |||||||||
| Contained_in_operon | CEOP1017 | ||||||||
| Ortholog (44) | |||||||||
| Paralog | WBGene00003898 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| WBGene00007009 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00008429 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00009460 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00009738 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00016405 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00017782 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00022069 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00022358 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | The Y48G8AL.1 gene encodes a homolog of human E6-AP ubiquitin-protein ligase, (UBE3A; OMIM:601623) which when mutated leads to one form of Angelman syndrome (OMIM:105830). | Curator_confirmed | WBPerson567 | |||||
| Date_last_updated | 06 Aug 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm. Is an ortholog of human HERC4 (HECT and RLD domain containing E3 ubiquitin protein ligase 4). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y48G8AL.1a | |||||||
| Y48G8AL.1b | |||||||||
| Y48G8AL.1c | |||||||||
| Y48G8AL.1d | |||||||||
| Y48G8AL.1e | |||||||||
| Corresponding_transcript | Y48G8AL.1a.1 | ||||||||
| Y48G8AL.1a.2 | |||||||||
| Y48G8AL.1b.1 | |||||||||
| Y48G8AL.1c.1 | |||||||||
| Y48G8AL.1d.1 | |||||||||
| Y48G8AL.1e.1 | |||||||||
| Other_sequence (32) | |||||||||
| Associated_feature (15) | |||||||||
| Experimental_info | RNAi_result (13) | ||||||||
| Expr_pattern | Expr1022744 | ||||||||
| Expr1039498 | |||||||||
| Expr1160409 | |||||||||
| Expr2012400 | |||||||||
| Expr2030636 | |||||||||
| Microarray_results (25) | |||||||||
| Expression_cluster (112) | |||||||||
| Interaction | WBInteraction000162274 | ||||||||
| WBInteraction000162276 | |||||||||
| WBInteraction000162279 | |||||||||
| WBInteraction000162281 | |||||||||
| WBInteraction000162679 | |||||||||
| WBInteraction000568918 | |||||||||
| Map_info | Map | I | Position | -16.1968 | Error | 0.35274 | |||
| Positive | Positive_clone | Y48G8AL | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027315 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064339 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
