WormBase Tree Display for Gene: WBGene00021808
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| WBGene00021808 | SMap | S_parent | Sequence | Y53G8AM | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | Y53G8AM.8 | |||||||
| Molecular_name | Y53G8AM.8a | ||||||||
| Y53G8AM.8a.1 | |||||||||
| CE54280 | |||||||||
| Y53G8AM.8b | |||||||||
| CE54296 | |||||||||
| Y53G8AM.8b.1 | |||||||||
| Other_name | Y53G8AM.a | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| Y53G8AM.b | Curator_confirmed | WBPerson1983 | |||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| Y53G8AM.c | Curator_confirmed | WBPerson1983 | |||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_Y53G8AM.8 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | Y53G8AM.8 | ||||||||
| DB_info | Database | AceView | gene | 3E358 | |||||
| WormQTL | gene | WBGene00021808 | |||||||
| WormFlux | gene | WBGene00021808 | |||||||
| NDB | locus_tag | CELE_Y53G8AM.8 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00021808|UniProtKB=Q9BL70 | |||||||
| family | PTHR19303 | ||||||||
| NCBI | gene | 175430 | |||||||
| RefSeq | protein | NM_001393303.1 | |||||||
| NM_065281.7 | |||||||||
| TrEMBL | UniProtAcc | A0A7R9XLQ2 | |||||||
| A0A8D9N0J4 | |||||||||
| UniProt_GCRP | UniProtAcc | A0A8D9N0J4 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:05 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (307) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (23) | |||||||||
| Structured_description | Automated_description | Enriched in XXXL; XXXR; neurons; and sensory neurons based on RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-12; hsf-1; and eat-2 based on tiling array; RNA-seq; microarray; and proteomic studies. Is affected by eight chemicals including stavudine; Psoralens; and allantoin based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: Tc5 transposase DNA-binding domain; Homeobox-like domain superfamily; and HTH CenpB-type DNA-binding domain. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y53G8AM.8a | |||||||
| Y53G8AM.8b | |||||||||
| Corresponding_CDS_history | Y53G8AM.8:wp154 | ||||||||
| Y53G8AM.8:wp279 | |||||||||
| Corresponding_transcript | Y53G8AM.8a.1 | ||||||||
| Y53G8AM.8b.1 | |||||||||
| Other_sequence (30) | |||||||||
| Associated_feature (12) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00037434 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00057310 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00070837 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00020959 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00020961 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00020960 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00070836 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1015373 | ||||||||
| Expr1039563 | |||||||||
| Expr1160747 | |||||||||
| Expr2007871 | |||||||||
| Expr2026112 | |||||||||
| Microarray_results (29) | |||||||||
| Expression_cluster (99) | |||||||||
| Interaction | WBInteraction000029032 | ||||||||
| WBInteraction000533227 | |||||||||
| WBInteraction000559998 | |||||||||
| Map_info | Positive | Positive_clone | Y53G8AM | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | III | -7.31212 | |||||||
| Reference | WBPaper00060275 | ||||||||
| Method | Gene |
