WormBase Tree Display for Gene: WBGene00021845
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WBGene00021845 | SMap | S_parent | Sequence | Y54E10BR | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | rpb-7 | Person_evidence | WBPerson1787 | |||||
Sequence_name | Y54E10BR.6 | ||||||||
Molecular_name | Y54E10BR.6 | ||||||||
Y54E10BR.6.1 | |||||||||
CE22465 | |||||||||
Other_name | Y54E10BR.c | Curator_confirmed | WBPerson1983 | ||||||
Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
CELE_Y54E10BR.6 | Accession_evidence | NDB | BX284601 | ||||||
Public_name | rpb-7 | ||||||||
DB_info | Database | AceView | gene | 1D600 | |||||
WormQTL | gene | WBGene00021845 | |||||||
WormFlux | gene | WBGene00021845 | |||||||
NDB | locus_tag | CELE_Y54E10BR.6 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00021845|UniProtKB=Q9N3C9 | |||||||
family | PTHR12709 | ||||||||
NCBI | gene | 171877 | |||||||
RefSeq | protein | NM_058692.7 | |||||||
TREEFAM | TREEFAM_ID | TF103042 | |||||||
TrEMBL | UniProtAcc | Q9N3C9 | |||||||
UniProt_GCRP | UniProtAcc | Q9N3C9 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:31:05 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 04 Oct 2007 14:17:58 | WBPerson2970 | Name_change | CGC_name | rpb-7 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | rpb | ||||||||
Allele (35) | |||||||||
Strain | WBStrain00051128 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (14) | |||||||||
Contained_in_operon | CEOP1924 | ||||||||
Ortholog (40) | |||||||||
Paralog | WBGene00014111 | Caenorhabditis elegans | From_analysis | Panther | |||||
WormBase-Compara | |||||||||
WBGene00017356 | Caenorhabditis elegans | From_analysis | Panther | ||||||
Structured_description | Automated_description | Predicted to enable single-stranded DNA binding activity; single-stranded RNA binding activity; and translation initiation factor binding activity. Predicted to be involved in regulation of gene expression and transcription initiation at RNA polymerase II promoter. Predicted to be located in P-body. Predicted to be part of RNA polymerase II, core complex. Is an ortholog of human POLR2G (RNA polymerase II subunit G). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | Y54E10BR.6 | |||||||
Corresponding_transcript | Y54E10BR.6.1 | ||||||||
Other_sequence (47) | |||||||||
Associated_feature | WBsf649002 | ||||||||
WBsf983048 | |||||||||
WBsf983049 | |||||||||
WBsf219091 | |||||||||
Experimental_info | RNAi_result (18) | ||||||||
Expr_pattern | Expr1011455 | ||||||||
Expr1039589 | |||||||||
Expr1160801 | |||||||||
Expr2015427 | |||||||||
Expr2033662 | |||||||||
Microarray_results (18) | |||||||||
Expression_cluster (116) | |||||||||
Interaction (151) | |||||||||
Map_info | Map | I | Position | -4.6617 | Error | 0.069522 | |||
Positive | Positive_clone | Y54E10BR | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00029038 | ||||||||
WBPaper00038491 | |||||||||
WBPaper00048493 | |||||||||
WBPaper00055090 | |||||||||
WBPaper00059527 | |||||||||
WBPaper00064339 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |