WormBase Tree Display for Gene: WBGene00021868
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WBGene00021868 | SMap | S_parent | Sequence | Y54G2A | ||
---|---|---|---|---|---|---|
Identity (6) | ||||||
Gene_info | Biotype | SO:0001217 | ||||
Gene_class | atln | |||||
Allele (154) | ||||||
Strain | WBStrain00031831 | |||||
WBStrain00047686 | ||||||
RNASeq_FPKM (74) | ||||||
GO_annotation | 00081747 | |||||
00081748 | ||||||
00081749 | ||||||
00081750 | ||||||
00081751 | ||||||
00105774 | ||||||
00126073 | ||||||
00126074 | ||||||
Ortholog (34) | ||||||
Paralog | WBGene00012763 | Caenorhabditis elegans | From_analysis | Panther | ||
WormBase-Compara | ||||||
Structured_description | Automated_description | Predicted to enable GTP binding activity and GTPase activity. Involved in IRE1-mediated unfolded protein response. Predicted to be located in membrane. Human ortholog(s) of this gene implicated in hereditary sensory neuropathy type 1D; hereditary sensory neuropathy type 1F; and hereditary spastic paraplegia 3A. Is an ortholog of human ATL3 (atlastin GTPase 3). | Paper_evidence | WBPaper00065943 | ||
Curator_confirmed | WBPerson324 | |||||
WBPerson37462 | ||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||
Date_last_updated | 29 Nov 2023 00:00:00 | |||||
Disease_info | Potential_model | DOID:0110791 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11231) | |
DOID:0070154 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:24526) | |||
DOID:0070156 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11231) | |||
Molecular_info | Corresponding_CDS | Y54G2A.2a | ||||
Y54G2A.2b | ||||||
Y54G2A.2c | ||||||
Y54G2A.2d | ||||||
Corresponding_CDS_history | Y54G2A.2:wp129 | |||||
Corresponding_transcript | Y54G2A.2a.1 | |||||
Y54G2A.2b.1 | ||||||
Y54G2A.2c.1 | ||||||
Y54G2A.2d.1 | ||||||
Other_sequence (71) | ||||||
Associated_feature | WBsf660004 | |||||
WBsf660005 | ||||||
WBsf995777 | ||||||
WBsf228049 | ||||||
WBsf228050 | ||||||
WBsf228051 | ||||||
WBsf228052 | ||||||
Experimental_info | RNAi_result | WBRNAi00112388 | Inferred_automatically | RNAi_primary | ||
WBRNAi00112387 | Inferred_automatically | RNAi_primary | ||||
WBRNAi00057450 | Inferred_automatically | RNAi_primary | ||||
WBRNAi00085582 | Inferred_automatically | RNAi_primary | ||||
WBRNAi00112386 | Inferred_automatically | RNAi_primary | ||||
Expr_pattern | Expr14263 | |||||
Expr1026901 | ||||||
Expr1039602 | ||||||
Expr1160883 | ||||||
Expr2009506 | ||||||
Expr2027743 | ||||||
Construct_product | WBCnstr00017652 | |||||
WBCnstr00040692 | ||||||
Antibody | WBAntibody00002439 | |||||
Microarray_results (29) | ||||||
Expression_cluster (93) | ||||||
Interaction (14) | ||||||
Map_info | Map | IV | Position | -6.73979 | ||
Positive | Positive_clone | Y54G2A | Inferred_automatically | From sequence, transcript, pseudogene data | ||
Pseudo_map_position | ||||||
Reference (7) | ||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||
Method | Gene |