WormBase Tree Display for Gene: WBGene00021921
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WBGene00021921 | SMap | S_parent | Sequence | Y55F3AM | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | rbm-39 | Person_evidence | WBPerson260 | |||||
Sequence_name | Y55F3AM.3 | ||||||||
Molecular_name | Y55F3AM.3a | ||||||||
Y55F3AM.3a.1 | |||||||||
CE29126 | |||||||||
Y55F3AM.3c | |||||||||
CE31656 | |||||||||
Y55F3AM.3b | |||||||||
Y55F3AM.3c.1 | |||||||||
Y55F3AM.3c.2 | |||||||||
Y55F3AM.3c.3 | |||||||||
Y55F3AM.3c.4 | |||||||||
Other_name | CELE_Y55F3AM.3 | Accession_evidence | NDB | BX284604 | |||||
Public_name | rbm-39 | ||||||||
DB_info | Database (11) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:31:05 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 07 Dec 2017 13:24:47 | WBPerson1983 | Name_change | CGC_name | rbm-39 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | rbm | ||||||||
Allele (184) | |||||||||
Possibly_affected_by | WBVar02158827 | ||||||||
Strain | WBStrain00002374 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00084679 | ||||||||
00084680 | |||||||||
00084681 | |||||||||
00084682 | |||||||||
00126104 | |||||||||
00126105 | |||||||||
00126106 | |||||||||
00126107 | |||||||||
Ortholog (41) | |||||||||
Paralog (14) | |||||||||
Structured_description | Automated_description | Predicted to enable chromatin DNA binding activity. Predicted to be involved in nuclear envelope organization. Predicted to be located in nucleus. Expressed in PVDL; PVDR; neurons; and tail. Is an ortholog of human RBM39 (RNA binding motif protein 39). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | Y55F3AM.3a | |||||||
Y55F3AM.3c | |||||||||
Corresponding_CDS_history | Y55F3AM.3b:wp252 | ||||||||
Corresponding_transcript | Y55F3AM.3b | ||||||||
Y55F3AM.3a.1 | |||||||||
Y55F3AM.3c.1 | |||||||||
Y55F3AM.3c.2 | |||||||||
Y55F3AM.3c.3 | |||||||||
Y55F3AM.3c.4 | |||||||||
Other_sequence (86) | |||||||||
Associated_feature | WBsf645778 | ||||||||
WBsf981666 | |||||||||
WBsf995317 | |||||||||
WBsf995318 | |||||||||
WBsf995319 | |||||||||
WBsf227906 | |||||||||
WBsf227907 | |||||||||
WBsf227908 | |||||||||
Experimental_info | RNAi_result (63) | ||||||||
Expr_pattern | Chronogram42 | ||||||||
Expr7064 | |||||||||
Expr12224 | |||||||||
Expr12231 | |||||||||
Expr1024642 | |||||||||
Expr1039634 | |||||||||
Expr1160963 | |||||||||
Expr2007982 | |||||||||
Expr2026224 | |||||||||
Drives_construct | WBCnstr00003024 | ||||||||
WBCnstr00020422 | |||||||||
Construct_product | WBCnstr00020474 | ||||||||
Microarray_results (41) | |||||||||
Expression_cluster (150) | |||||||||
Interaction (16) | |||||||||
Map_info | Map | IV | Position | -22.7055 | |||||
Positive | Positive_clone | Y55F3AM | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00038491 | ||||||||
WBPaper00046432 | |||||||||
WBPaper00046601 | |||||||||
WBPaper00055090 | |||||||||
WBPaper00063218 | |||||||||
WBPaper00065314 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |