WormBase Tree Display for Gene: WBGene00021987
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WBGene00021987 | SMap | S_parent | Sequence | Y59E1A | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 3 | |||||||
Name | CGC_name | fbxa-40 | Person_evidence | WBPerson655 | |||||
Sequence_name | Y59E1A.1 | ||||||||
Molecular_name | Y59E1A.1 | ||||||||
Y59E1A.1.1 | |||||||||
CE39372 | |||||||||
Other_name | Y59E1A.b | Curator_confirmed | WBPerson1983 | ||||||
Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
CELE_Y59E1A.1 | Accession_evidence | NDB | BX284606 | ||||||
Public_name | fbxa-40 | ||||||||
DB_info | Database | AceView | gene | XC554 | |||||
WormQTL | gene | WBGene00021987 | |||||||
WormFlux | gene | WBGene00021987 | |||||||
NDB | locus_tag | CELE_Y59E1A.1 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00021987|UniProtKB=Q968Z2 | |||||||
family | PTHR23015 | ||||||||
NCBI | gene | 190408 | |||||||
RefSeq | protein | NM_001374973.1 | |||||||
TREEFAM | TREEFAM_ID | TF322360 | |||||||
TrEMBL | UniProtAcc | Q9TXM9 | |||||||
UniProt_GCRP | UniProtAcc | Q9TXM9 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:31:05 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 12 Dec 2005 15:18:56 | WBPerson2970 | Name_change | CGC_name | fbxa-40 | ||||
3 | 25 Jul 2019 15:06:07 | WBPerson4025 | Event | Split_into | WBGene00304826 | ||||
Split_into | WBGene00304826 | ||||||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | fbxa | ||||||||
Allele (33) | |||||||||
RNASeq_FPKM (74) | |||||||||
Ortholog (18) | |||||||||
Paralog (222) | |||||||||
Structured_description | Concise_description | fbxa-40 encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; FBXA-40 also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction. | Paper_evidence | WBPaper00012854 | |||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Enriched in body wall muscle cell based on tiling array studies. Is affected by several genes including daf-16; sir-2.1; and pgl-1 based on RNA-seq and microarray studies. Is affected by fluoranthene; Chlorpyrifos; and Diazinon based on microarray studies. Is predicted to encode a protein with the following domains: F-box-like domain superfamily; FTH domain; F-box domain; Domain of unknown function DUF38/FTH, Caenorhabditis species; and F-box A protein FB224. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | Y59E1A.1 | |||||||
Corresponding_CDS_history | Y59E1A.1:wp88 | ||||||||
Y59E1A.1:wp272 | |||||||||
Corresponding_transcript | Y59E1A.1.1 | ||||||||
Associated_feature | WBsf670130 | ||||||||
WBsf670131 | |||||||||
WBsf1004184 | |||||||||
WBsf1004185 | |||||||||
WBsf1004186 | |||||||||
WBsf1022375 | |||||||||
Experimental_info | RNAi_result | WBRNAi00015400 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00021169 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00047967 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1161188 | ||||||||
Drives_construct | WBCnstr00024375 | ||||||||
Construct_product | WBCnstr00024375 | ||||||||
Microarray_results (16) | |||||||||
Expression_cluster (38) | |||||||||
Map_info | Map | X | Position | -17.2861 | Error | 0.012831 | |||
Positive | Positive_clone | Y59E1A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |