WormBase Tree Display for Gene: WBGene00022020

WBGene00022020 SMap: S_parent: Sequence: Y61A9LA
  Identity: Version: 2
    Name: CGC_name: hpo-39 Paper_evidence: WBPaper00038231
          Person_evidence: WBPerson26
      Sequence_name: Y61A9LA.9
      Molecular_name: Y61A9LA.9
        Y61A9LA.9.1
        CE22673
      Other_name: Y61A9LA.d Curator_confirmed: WBPerson1983
          Remark: Old cosmid naming mapped via unique overlapping PCR_product on CDSs
        Y61A9LA.k Curator_confirmed: WBPerson1983
          Remark: Old cosmid naming mapped via unique overlapping PCR_product on CDSs
        CELE_Y61A9LA.9 Accession_evidence: NDB BX284605
      Public_name: hpo-39
    DB_info: Database: AceView gene 5F52
        WormQTL gene WBGene00022020
        WormFlux gene WBGene00022020
        NDB locus_tag CELE_Y61A9LA.9
        NCBI gene 190447
        RefSeq protein NM_071841.1
        TREEFAM TREEFAM_ID TF353236
        TrEMBL UniProtAcc Q9N312
        UniProt_GCRP UniProtAcc Q9N312
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:05 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 26 Apr 2011 13:31:47 WBPerson2970 Name_change: CGC_name: hpo-39
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: hpo
    Allele (13)
    RNASeq_FPKM (74)
    Ortholog (52)
    Paralog: WBGene00022239 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00044503 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00018186 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Enriched in several structures, including ABalppppapa; ABpraaapapa; I5 neuron; OLQ; and cholinergic neurons based on single-cell RNA-seq and microarray studies. Is affected by several genes including pie-1; eat-2; and sir-2.1 based on microarray and RNA-seq studies. Is affected by six chemicals including Psoralens; allantoin; and Sirolimus based on RNA-seq and microarray studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y61A9LA.9
    Corresponding_transcript: Y61A9LA.9.1
    Associated_feature: WBsf652582
  Experimental_info: RNAi_result (12)
    Expr_pattern: Expr1017097
      Expr1039675
      Expr1161269
      Expr2012578
      Expr2030814
    Microarray_results: SMD_Y61A9LA_69.A
      177175_at
      177176_s_at
      Aff_Y61A9LA_69.A
      GPL3518_CE22673
      GPL8673_Y61A9LA_9P00207
      GPL8673_Y61A9LA_9P00723
      GPL9450_Y61A9LA.9
      cea2.i.47867
    Expression_cluster (52)
    Interaction: WBInteraction000545930
      WBInteraction000547342
      WBInteraction000547562
      WBInteraction000548807
      WBInteraction000548839
  Map_info: Map: V Position: -4.98937
    Positive: Positive_clone: Y61A9LA Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene