WormBase Tree Display for Gene: WBGene00022122
expand all nodes | collapse all nodes | view schema
WBGene00022122 | SMap | S_parent | Sequence | Y71F9AM | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | trap-1 | |||||||
Sequence_name | Y71F9AM.6 | ||||||||
Molecular_name | Y71F9AM.6 | ||||||||
Y71F9AM.6.1 | |||||||||
CE26244 | |||||||||
Other_name | CELE_Y71F9AM.6 | Accession_evidence | NDB | BX284601 | |||||
Public_name | trap-1 | ||||||||
DB_info | Database | AceView | gene | 1D497 | |||||
WormQTL | gene | WBGene00022122 | |||||||
WormFlux | gene | WBGene00022122 | |||||||
NDB | locus_tag | CELE_Y71F9AM.6 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00022122|UniProtKB=Q95XT5 | |||||||
family | PTHR12924 | ||||||||
NCBI | gene | 171865 | |||||||
RefSeq | protein | NM_058675.6 | |||||||
TREEFAM | TREEFAM_ID | TF321074 | |||||||
TrEMBL | UniProtAcc | Q95XT5 | |||||||
UniProt_GCRP | UniProtAcc | Q95XT5 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:31:05 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 04 Oct 2007 11:57:48 | WBPerson2970 | Name_change | CGC_name | trap-1 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | trap | ||||||||
Allele (20) | |||||||||
Strain | WBStrain00052143 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00089323 | ||||||||
00089324 | |||||||||
00089325 | |||||||||
00089326 | |||||||||
00089327 | |||||||||
00126306 | |||||||||
Contained_in_operon | CEOP1076 | ||||||||
Ortholog (35) | |||||||||
Structured_description | Automated_description | Predicted to be located in endoplasmic reticulum. Is an ortholog of human SSR1 (signal sequence receptor subunit 1). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | Y71F9AM.6 | |||||||
Corresponding_transcript | Y71F9AM.6.1 | ||||||||
Other_sequence (52) | |||||||||
Associated_feature | WBsf643122 | ||||||||
WBsf656098 | |||||||||
WBsf980978 | |||||||||
WBsf983020 | |||||||||
WBsf217351 | |||||||||
WBsf217352 | |||||||||
Experimental_info | RNAi_result | WBRNAi00058169 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr14927 | ||||||||
Expr14928 | |||||||||
Expr1025554 | |||||||||
Expr1039735 | |||||||||
Expr1161586 | |||||||||
Expr2017481 | |||||||||
Expr2035620 | |||||||||
Microarray_results (17) | |||||||||
Expression_cluster (179) | |||||||||
Interaction (27) | |||||||||
Map_info | Map | I | Position | -5.29003 | Error | 0.002706 | |||
Positive | Positive_clone | Y71F9AM | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00038491 | ||||||||
WBPaper00047692 | |||||||||
WBPaper00055090 | |||||||||
WBPaper00058976 | |||||||||
WBPaper00061795 | |||||||||
WBPaper00062388 | |||||||||
WBPaper00062794 | |||||||||
WBPaper00065356 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |