WormBase Tree Display for Gene: WBGene00022138
expand all nodes | collapse all nodes | view schema
| WBGene00022138 | SMap | S_parent | Sequence | CHROMOSOME_I | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 4 | |||||||
| Name | CGC_name | trpp-10 | Person_evidence | WBPerson3188 | |||||
| Sequence_name | Y71G12A.2 | ||||||||
| Molecular_name (12) | |||||||||
| Other_name | Y71G12A.b | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| Y71G12A.d | Curator_confirmed | WBPerson1983 | |||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_Y71G12A.2 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | trpp-10 | ||||||||
| DB_info | Database | AceView | gene | 1C395 | |||||
| WormQTL | gene | WBGene00022138 | |||||||
| WormFlux | gene | WBGene00022138 | |||||||
| NDB | locus_tag | CELE_Y71G12A.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00022138|UniProtKB=B1V899 | |||||||
| family | PTHR13251 | ||||||||
| NCBI | gene | 3564796 | |||||||
| RefSeq | protein | NM_001392996.1 | |||||||
| NM_001129082.4 | |||||||||
| NM_001377686.1 | |||||||||
| TREEFAM | TREEFAM_ID | TF320954 | |||||||
| TrEMBL | UniProtAcc | B1V899 | |||||||
| H2L0P2 | |||||||||
| Q9BL51 | |||||||||
| UniProt_GCRP | UniProtAcc | B1V899 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:05 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 08 Aug 2013 16:40:57 | WBPerson2970 | Name_change | CGC_name | trpp-10 | ||||
| 3 | 08 Aug 2013 16:41:57 | WBPerson2970 | Name_change | CGC_name | trpp-10 | ||||
| 4 | 10 Jun 2014 12:12:12 | WBPerson1983 | Event | Acquires_merge | WBGene00021767 | ||||
| Acquires_merge | WBGene00021767 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | trpp | ||||||||
| Allele (877) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00005714 | ||||||||
| 00005715 | |||||||||
| 00005716 | |||||||||
| 00005717 | |||||||||
| 00126316 | |||||||||
| 00126317 | |||||||||
| Contained_in_operon | CEOP1931 | ||||||||
| Ortholog (45) | |||||||||
| Structured_description | Automated_description | Predicted to be involved in early endosome to Golgi transport and intra-Golgi vesicle-mediated transport. Predicted to be located in cytosol. Predicted to be part of TRAPPII protein complex. Is an ortholog of human TRAPPC10 (trafficking protein particle complex subunit 10). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y71G12A.2a | |||||||
| Y71G12A.2b | |||||||||
| Y71G12A.2c | |||||||||
| Corresponding_CDS_history | Y71G12A.1:wp50 | ||||||||
| Y71G12A.2:wp114 | |||||||||
| Y71G12A.2:wp124 | |||||||||
| Y71G12A.2:wp189 | |||||||||
| Y71G12A.2a:wp274 | |||||||||
| Y71G12A.2b:wp214 | |||||||||
| Y71G12A.2b:wp228 | |||||||||
| Corresponding_transcript | Y71G12A.2a.1 | ||||||||
| Y71G12A.2b.1 | |||||||||
| Y71G12A.2c.1 | |||||||||
| Y71G12A.2c.2 | |||||||||
| Y71G12A.2c.3 | |||||||||
| Y71G12A.2c.4 | |||||||||
| Other_sequence (16) | |||||||||
| Associated_feature | WBsf643073 | ||||||||
| WBsf655999 | |||||||||
| WBsf656000 | |||||||||
| WBsf656001 | |||||||||
| WBsf982776 | |||||||||
| WBsf1009267 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00057159 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00037786 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00004963 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00117119 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00012580 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00058191 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr7788 | ||||||||
| Expr1019814 | |||||||||
| Expr1039746 | |||||||||
| Expr1161609 | |||||||||
| Expr2017506 | |||||||||
| Expr2035645 | |||||||||
| Drives_construct | WBCnstr00012933 | ||||||||
| Microarray_results (31) | |||||||||
| Expression_cluster (58) | |||||||||
| Interaction | WBInteraction000123845 | ||||||||
| Map_info | Map | I | Position | -12.4524 | |||||
| Positive | Positive_clone | Y71G12A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064339 | |||||||||
| WBPaper00065036 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| [140610 pad] Gene was missing Acquires_merge Event history data so inferred from Acquires_merge tag. | |||||||||
| Method | Gene |
