WormBase Tree Display for Gene: WBGene00022152
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| WBGene00022152 | SMap | S_parent | Sequence | Y71G12B | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | atg-5 | Person_evidence | WBPerson649 | |||||
| Sequence_name | Y71G12B.12 | ||||||||
| Molecular_name | Y71G12B.12a | ||||||||
| Y71G12B.12a.1 | |||||||||
| CE43967 | |||||||||
| Y71G12B.12b | |||||||||
| CE39066 | |||||||||
| Y71G12B.12c | |||||||||
| CE39065 | |||||||||
| Y71G12B.12b.1 | |||||||||
| Y71G12B.12c.1 | |||||||||
| Other_name | atgr-5 | Person_evidence | WBPerson649 | ||||||
| CELE_Y71G12B.12 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | atg-5 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:05 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 27 Apr 2006 11:26:11 | WBPerson2970 | Name_change | CGC_name | atgr-5 | ||||
| 3 | 29 Feb 2008 11:29:00 | WBPerson2970 | Name_change | CGC_name | atg-5 | ||||
| Other_name | atgr-5 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | atg | ||||||||
| Allele (185) | |||||||||
| Possibly_affected_by | WBVar02158465 | ||||||||
| WBVar02158466 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (17) | |||||||||
| Contained_in_operon | CEOP1020 | ||||||||
| Ortholog (34) | |||||||||
| Structured_description | Concise_description | atg-5 encodes, by alternative splicing, two isoforms of an ortholog of the autophagic budding yeast protein Atg5p, and of human ATG5 (OMIM:604261); ATG-5 has no obvious function in mass RNAi assays. | Paper_evidence | WBPaper00031045 | |||||
| WBPaper00031504 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 27 Feb 2008 00:00:00 | ||||||||
| Automated_description | Predicted to contribute to Atg8-family ligase activity. Involved in autophagosome assembly and regulation of autophagy. Predicted to be located in phagophore assembly site membrane. Predicted to be part of Atg12-Atg5-Atg16 complex. Human ortholog(s) of this gene implicated in autosomal recessive spinocerebellar ataxia 25. Is an ortholog of human ATG5 (autophagy related 5). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0080259 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:589) | ||||
| Molecular_info | Corresponding_CDS | Y71G12B.12a | |||||||
| Y71G12B.12b | |||||||||
| Y71G12B.12c | |||||||||
| Corresponding_CDS_history | Y71G12B.12a:wp147 | ||||||||
| Y71G12B.12a:wp205 | |||||||||
| Y71G12B.12b:wp147 | |||||||||
| Corresponding_transcript | Y71G12B.12a.1 | ||||||||
| Y71G12B.12b.1 | |||||||||
| Y71G12B.12c.1 | |||||||||
| Other_sequence (25) | |||||||||
| Associated_feature | WBsf982742 | ||||||||
| WBsf982743 | |||||||||
| WBsf1009244 | |||||||||
| WBsf1009245 | |||||||||
| WBsf217240 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00117121 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00058198 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00086922 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1018812 | ||||||||
| Expr1039758 | |||||||||
| Expr1161615 | |||||||||
| Expr2009494 | |||||||||
| Expr2027731 | |||||||||
| Microarray_results (25) | |||||||||
| Expression_cluster (65) | |||||||||
| Interaction (13) | |||||||||
| Map_info | Map | I | Position | -13.2176 | Error | 0.036147 | |||
| Positive | Positive_clone | Y71G12B | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (14) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
